Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27780

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfE and OKFHMN_27780 are separated by 198 nucleotidesOKFHMN_27780 and ynfC are separated by 71 nucleotidesynfC and speG are separated by 2 nucleotides OKFHMN_27775: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 5,350,123 to 5,352,549 ynfE OKFHMN_27780: OKFHMN_27780 - DUF1161 domain-containing protein, at 5,352,748 to 5,353,053 _27780 OKFHMN_27785: ynfC - YnfC family lipoprotein, at 5,353,125 to 5,353,871 ynfC OKFHMN_27790: speG - spermidine N1-acetyltransferase, at 5,353,874 to 5,354,434 speG Position (kb) 5352 5353 5354Strain fitness (log2 ratio) -2 -1 0 1at 5352.664 kb on - strandat 5352.671 kb on + strandat 5352.680 kb on + strandat 5352.698 kb on + strandat 5352.698 kb on + strandat 5352.908 kb on - strand, within OKFHMN_27780at 5352.958 kb on - strand, within OKFHMN_27780at 5353.514 kb on - strand, within ynfCat 5353.739 kb on + strand, within ynfC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,352,664 - +1.2
5,352,671 + -1.2
5,352,680 + -2.2
5,352,698 + +0.1
5,352,698 + +1.4
5,352,908 - OKFHMN_27780 0.52 -1.0
5,352,958 - OKFHMN_27780 0.69 +0.0
5,353,514 - ynfC OKFHMN_27785 0.52 -0.3
5,353,739 + ynfC OKFHMN_27785 0.82 -0.3

Or see this region's nucleotide sequence