Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27670

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrstB and rstA are separated by 3 nucleotidesrstA and ydgC are separated by 128 nucleotidesydgC and folM overlap by 4 nucleotidesfolM and ydgI are separated by 36 nucleotides OKFHMN_27660: rstB - two-component system sensor histidine kinase RstB, at 5,326,436 to 5,327,737 rstB OKFHMN_27665: rstA - two-component system response regulator RstA, at 5,327,741 to 5,328,460 rstA OKFHMN_27670: ydgC - Inner membrane protein YdgC, at 5,328,589 to 5,328,924 ydgC OKFHMN_27675: folM - dihydromonapterin reductase, at 5,328,921 to 5,329,643 folM OKFHMN_27680: ydgI - Putative arginine/ornithine antiporter, at 5,329,680 to 5,331,062 ydgI Position (kb) 5328 5329Strain fitness (log2 ratio) -2 -1 0 1 2at 5328.402 kb on + strandat 5328.452 kb on - strandat 5328.566 kb on + strandat 5328.642 kb on - strand, within ydgCat 5328.719 kb on - strand, within ydgCat 5328.720 kb on + strand, within ydgCat 5328.774 kb on + strand, within ydgCat 5328.901 kb on - strandat 5328.985 kb on - strandat 5329.226 kb on - strand, within folMat 5329.535 kb on - strand, within folMat 5329.615 kb on - strandat 5329.648 kb on - strandat 5329.870 kb on - strand, within ydgI

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,328,402 + -0.3
5,328,452 - -1.0
5,328,566 + +0.8
5,328,642 - ydgC OKFHMN_27670 0.16 +0.5
5,328,719 - ydgC OKFHMN_27670 0.39 -2.1
5,328,720 + ydgC OKFHMN_27670 0.39 +1.8
5,328,774 + ydgC OKFHMN_27670 0.55 -0.5
5,328,901 - -0.5
5,328,985 - -1.9
5,329,226 - folM OKFHMN_27675 0.42 +0.4
5,329,535 - folM OKFHMN_27675 0.85 -0.9
5,329,615 - +0.7
5,329,648 - +0.1
5,329,870 - ydgI OKFHMN_27680 0.14 -0.4

Or see this region's nucleotide sequence