Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27205

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotidesuhpC and ydiM are separated by 226 nucleotides OKFHMN_27195: aroD - 3-dehydroquinate dehydratase, at 5,235,264 to 5,236,022 aroD OKFHMN_27200: ydiB - quinate/shikimate dehydrogenase, at 5,236,053 to 5,236,919 ydiB OKFHMN_27205: uhpC - MFS transporter, at 5,236,931 to 5,238,196 uhpC OKFHMN_27210: ydiM - Inner membrane transport protein YdiM, at 5,238,423 to 5,239,637 ydiM Position (kb) 5236 5237 5238 5239Strain fitness (log2 ratio) -3 -2 -1 0 1at 5236.280 kb on + strand, within ydiBat 5236.722 kb on + strand, within ydiBat 5236.805 kb on - strand, within ydiBat 5237.304 kb on + strand, within uhpCat 5237.724 kb on + strand, within uhpCat 5238.622 kb on + strand, within ydiMat 5239.001 kb on - strand, within ydiMat 5239.127 kb on + strand, within ydiMat 5239.180 kb on - strand, within ydiM

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,236,280 + ydiB OKFHMN_27200 0.26 -0.3
5,236,722 + ydiB OKFHMN_27200 0.77 +0.3
5,236,805 - ydiB OKFHMN_27200 0.87 -0.1
5,237,304 + uhpC OKFHMN_27205 0.29 -0.0
5,237,724 + uhpC OKFHMN_27205 0.63 -1.2
5,238,622 + ydiM OKFHMN_27210 0.16 -3.0
5,239,001 - ydiM OKFHMN_27210 0.48 +0.9
5,239,127 + ydiM OKFHMN_27210 0.58 -0.2
5,239,180 - ydiM OKFHMN_27210 0.62 +1.4

Or see this region's nucleotide sequence