Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27055

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_27050 and thrS are separated by 522 nucleotidesthrS and infC are separated by 111 nucleotidesinfC and OKFHMN_27065 are separated by 96 nucleotidesOKFHMN_27065 and thrS are separated by 52 nucleotides OKFHMN_27050: OKFHMN_27050 - ShET2 enterotoxin, N-terminal region, at 5,205,716 to 5,207,614 _27050 OKFHMN_27055: thrS - threonine--tRNA ligase, at 5,208,137 to 5,210,065 thrS OKFHMN_27060: infC - translation initiation factor IF-3, at 5,210,177 to 5,210,611 infC OKFHMN_27065: OKFHMN_27065 - 50S ribosomal protein L35, at 5,210,708 to 5,210,905 _27065 OKFHMN_27070: thrS - threonine--tRNA ligase, at 5,210,958 to 5,211,314 thrS Position (kb) 5208 5209 5210 5211Strain fitness (log2 ratio) -1 0 1 2at 5207.900 kb on - strandat 5207.940 kb on + strandat 5210.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,207,900 - +1.9
5,207,940 + -1.2
5,210,903 + +1.4

Or see this region's nucleotide sequence