Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26870

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynjE and ynjD are separated by 66 nucleotidesynjD and ynjC overlap by 1 nucleotidesynjC and ynjB overlap by 28 nucleotides OKFHMN_26860: ynjE - thiosulfate sulfurtransferase YnjE, at 5,170,133 to 5,171,440 ynjE OKFHMN_26865: ynjD - Uncharacterized ABC transporter ATP-binding protein YnjD, at 5,171,507 to 5,172,160 ynjD OKFHMN_26870: ynjC - Inner membrane ABC transporter permease protein YnjC, at 5,172,160 to 5,173,695 ynjC OKFHMN_26875: ynjB - ABC transporter substrate-binding protein, at 5,173,668 to 5,174,834 ynjB Position (kb) 5172 5173 5174Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5171.828 kb on - strand, within ynjDat 5171.828 kb on - strand, within ynjDat 5171.846 kb on - strand, within ynjDat 5172.086 kb on - strand, within ynjDat 5172.352 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.364 kb on - strand, within ynjCat 5172.412 kb on - strand, within ynjCat 5172.886 kb on + strand, within ynjCat 5172.898 kb on - strand, within ynjCat 5172.919 kb on + strand, within ynjCat 5172.919 kb on + strand, within ynjCat 5172.919 kb on + strand, within ynjCat 5173.434 kb on + strand, within ynjCat 5173.435 kb on - strand, within ynjCat 5173.435 kb on - strand, within ynjCat 5173.890 kb on + strand, within ynjBat 5174.649 kb on - strand, within ynjB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,171,828 - ynjD OKFHMN_26865 0.49 -0.3
5,171,828 - ynjD OKFHMN_26865 0.49 -0.9
5,171,846 - ynjD OKFHMN_26865 0.52 +0.7
5,172,086 - ynjD OKFHMN_26865 0.89 -0.1
5,172,352 - ynjC OKFHMN_26870 0.12 -0.5
5,172,354 - ynjC OKFHMN_26870 0.13 +1.8
5,172,354 - ynjC OKFHMN_26870 0.13 -0.4
5,172,364 - ynjC OKFHMN_26870 0.13 -1.0
5,172,412 - ynjC OKFHMN_26870 0.16 -0.6
5,172,886 + ynjC OKFHMN_26870 0.47 -0.7
5,172,898 - ynjC OKFHMN_26870 0.48 +2.6
5,172,919 + ynjC OKFHMN_26870 0.49 +1.7
5,172,919 + ynjC OKFHMN_26870 0.49 +0.1
5,172,919 + ynjC OKFHMN_26870 0.49 +0.1
5,173,434 + ynjC OKFHMN_26870 0.83 +2.8
5,173,435 - ynjC OKFHMN_26870 0.83 +0.3
5,173,435 - ynjC OKFHMN_26870 0.83 +0.4
5,173,890 + ynjB OKFHMN_26875 0.19 -2.6
5,174,649 - ynjB OKFHMN_26875 0.84 +2.1

Or see this region's nucleotide sequence