Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26775

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjG and ydjF are separated by 136 nucleotidesydjF and OKFHMN_26780 are separated by 117 nucleotidesOKFHMN_26780 and OKFHMN_26785 overlap by 26 nucleotides OKFHMN_26770: ydjG - NADH-dependent methylglyoxal reductase, at 5,152,831 to 5,153,811 ydjG OKFHMN_26775: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 5,153,948 to 5,154,706 ydjF OKFHMN_26780: OKFHMN_26780 - Insertion sequence 2 OrfA protein, at 5,154,824 to 5,154,994 _26780 OKFHMN_26785: OKFHMN_26785 - IS3 family transposase, at 5,154,969 to 5,155,856 _26785 Position (kb) 5153 5154 5155Strain fitness (log2 ratio) -2 -1 0 1 2at 5153.028 kb on + strand, within ydjGat 5153.215 kb on + strand, within ydjGat 5153.260 kb on + strand, within ydjGat 5153.292 kb on + strand, within ydjGat 5153.809 kb on + strandat 5154.145 kb on + strand, within ydjFat 5154.155 kb on + strand, within ydjFat 5154.226 kb on + strand, within ydjFat 5154.253 kb on + strand, within ydjFat 5154.256 kb on + strand, within ydjFat 5154.381 kb on + strand, within ydjFat 5154.616 kb on + strand, within ydjFat 5154.625 kb on + strand, within ydjFat 5154.629 kb on + strand, within ydjFat 5154.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,153,028 + ydjG OKFHMN_26770 0.20 +2.0
5,153,215 + ydjG OKFHMN_26770 0.39 +0.5
5,153,260 + ydjG OKFHMN_26770 0.44 +0.2
5,153,292 + ydjG OKFHMN_26770 0.47 +0.3
5,153,809 + +0.8
5,154,145 + ydjF OKFHMN_26775 0.26 -0.1
5,154,155 + ydjF OKFHMN_26775 0.27 -0.2
5,154,226 + ydjF OKFHMN_26775 0.37 +0.9
5,154,253 + ydjF OKFHMN_26775 0.40 +0.4
5,154,256 + ydjF OKFHMN_26775 0.41 +0.1
5,154,381 + ydjF OKFHMN_26775 0.57 +0.5
5,154,616 + ydjF OKFHMN_26775 0.88 -0.0
5,154,625 + ydjF OKFHMN_26775 0.89 -2.4
5,154,629 + ydjF OKFHMN_26775 0.90 -0.9
5,154,633 + -0.1

Or see this region's nucleotide sequence