Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26765

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydjJ and ydjI are separated by 20 nucleotidesydjI and rbsK are separated by 4 nucleotidesrbsK and ydjG are separated by 9 nucleotides OKFHMN_26755: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 5,149,984 to 5,151,027 ydjJ OKFHMN_26760: ydjI - Uncharacterized protein YdjI, at 5,151,048 to 5,151,884 ydjI OKFHMN_26765: rbsK - sugar kinase, at 5,151,889 to 5,152,821 rbsK OKFHMN_26770: ydjG - NADH-dependent methylglyoxal reductase, at 5,152,831 to 5,153,811 ydjG Position (kb) 5151 5152 5153Strain fitness (log2 ratio) -1 0 1 2at 5151.428 kb on + strand, within ydjIat 5151.539 kb on + strand, within ydjIat 5151.827 kb on - strandat 5152.940 kb on + strand, within ydjGat 5153.028 kb on + strand, within ydjGat 5153.215 kb on + strand, within ydjGat 5153.260 kb on + strand, within ydjGat 5153.292 kb on + strand, within ydjGat 5153.809 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,151,428 + ydjI OKFHMN_26760 0.45 -0.8
5,151,539 + ydjI OKFHMN_26760 0.59 +0.7
5,151,827 - -0.3
5,152,940 + ydjG OKFHMN_26770 0.11 +0.4
5,153,028 + ydjG OKFHMN_26770 0.20 +2.0
5,153,215 + ydjG OKFHMN_26770 0.39 +0.5
5,153,260 + ydjG OKFHMN_26770 0.44 +0.2
5,153,292 + ydjG OKFHMN_26770 0.47 +0.3
5,153,809 + +0.8

Or see this region's nucleotide sequence