Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26720

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmipA and yeaE are separated by 89 nucleotidesyeaE and yeaD are separated by 50 nucleotides OKFHMN_26715: mipA - scaffolding protein MipA, at 5,142,342 to 5,143,088 mipA OKFHMN_26720: yeaE - methylglyoxal reductase YeaE, at 5,143,178 to 5,144,032 yeaE OKFHMN_26725: yeaD - Putative glucose-6-phosphate 1-epimerase, at 5,144,083 to 5,144,967 yeaD Position (kb) 5143 5144 5145Strain fitness (log2 ratio) -2 -1 0 1at 5142.501 kb on + strand, within mipAat 5142.546 kb on + strand, within mipAat 5142.656 kb on + strand, within mipAat 5142.858 kb on + strand, within mipAat 5142.858 kb on + strand, within mipAat 5142.858 kb on + strand, within mipAat 5143.244 kb on + strandat 5143.245 kb on - strandat 5143.245 kb on - strandat 5143.509 kb on + strand, within yeaEat 5143.854 kb on + strand, within yeaEat 5143.971 kb on + strandat 5144.384 kb on - strand, within yeaD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,142,501 + mipA OKFHMN_26715 0.21 -0.7
5,142,546 + mipA OKFHMN_26715 0.27 -0.7
5,142,656 + mipA OKFHMN_26715 0.42 -1.9
5,142,858 + mipA OKFHMN_26715 0.69 +0.9
5,142,858 + mipA OKFHMN_26715 0.69 +0.6
5,142,858 + mipA OKFHMN_26715 0.69 +0.0
5,143,244 + -1.4
5,143,245 - -0.4
5,143,245 - -0.3
5,143,509 + yeaE OKFHMN_26720 0.39 -1.1
5,143,854 + yeaE OKFHMN_26720 0.79 -1.5
5,143,971 + -0.7
5,144,384 - yeaD OKFHMN_26725 0.34 -0.0

Or see this region's nucleotide sequence