Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26185

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhe and yecT are separated by 119 nucleotidesyecT and argS are separated by 176 nucleotidesargS and yecM are separated by 215 nucleotidesyecM and cutC are separated by 13 nucleotides OKFHMN_26175: flhe - flagellar protein FlhE, at 5,045,514 to 5,045,909 flhe OKFHMN_26180: yecT - Uncharacterized protein YecT, at 5,046,029 to 5,046,517 yecT OKFHMN_26185: argS - arginine--tRNA ligase, at 5,046,694 to 5,048,427 argS OKFHMN_26190: yecM - VOC family protein, at 5,048,643 to 5,049,209 yecM OKFHMN_26195: cutC - copper homeostasis protein CutC, at 5,049,223 to 5,049,969 cutC Position (kb) 5046 5047 5048 5049Strain fitness (log2 ratio) -1 0 1at 5046.118 kb on + strand, within yecTat 5046.152 kb on - strand, within yecTat 5046.155 kb on + strand, within yecTat 5046.583 kb on + strandat 5046.696 kb on - strandat 5048.554 kb on - strandat 5048.713 kb on + strand, within yecMat 5048.713 kb on + strand, within yecMat 5048.713 kb on + strand, within yecMat 5048.852 kb on + strand, within yecMat 5048.924 kb on + strand, within yecMat 5048.981 kb on + strand, within yecMat 5049.211 kb on + strandat 5049.211 kb on + strandat 5049.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,046,118 + yecT OKFHMN_26180 0.18 +0.1
5,046,152 - yecT OKFHMN_26180 0.25 -0.9
5,046,155 + yecT OKFHMN_26180 0.26 -0.7
5,046,583 + +0.3
5,046,696 - +1.7
5,048,554 - +1.3
5,048,713 + yecM OKFHMN_26190 0.12 +0.1
5,048,713 + yecM OKFHMN_26190 0.12 +0.3
5,048,713 + yecM OKFHMN_26190 0.12 -0.6
5,048,852 + yecM OKFHMN_26190 0.37 -0.5
5,048,924 + yecM OKFHMN_26190 0.50 +0.4
5,048,981 + yecM OKFHMN_26190 0.60 -0.5
5,049,211 + -0.1
5,049,211 + -1.2
5,049,211 + -0.3

Or see this region's nucleotide sequence