Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25950 and marR overlap by 4 nucleotides marR and OKFHMN_25960 overlap by 4 nucleotides OKFHMN_25960 and OKFHMN_25965 are separated by 23 nucleotides OKFHMN_25965 and OKFHMN_25970 are separated by 92 nucleotides OKFHMN_25970 and OKFHMN_25975 overlap by 4 nucleotides OKFHMN_25975 and OKFHMN_25980 are separated by 11 nucleotides OKFHMN_25980 and OKFHMN_25985 are separated by 10 nucleotides
OKFHMN_25950: OKFHMN_25950 - hypothetical protein, at 5,010,701 to 5,011,000
_25950
OKFHMN_25955: marR - MarR family transcriptional regulator, at 5,010,997 to 5,011,263
marR
OKFHMN_25960: OKFHMN_25960 - hypothetical protein, at 5,011,260 to 5,011,463
_25960
OKFHMN_25965: OKFHMN_25965 - Phage protein, at 5,011,487 to 5,011,903
_25965
OKFHMN_25970: OKFHMN_25970 - Membrane protein, at 5,011,996 to 5,012,109
_25970
OKFHMN_25975: OKFHMN_25975 - DUF4754 domain-containing protein, at 5,012,106 to 5,012,348
_25975
OKFHMN_25980: OKFHMN_25980 - hypothetical protein, at 5,012,360 to 5,012,638
_25980
OKFHMN_25985: OKFHMN_25985 - DUF4761 domain-containing protein, at 5,012,649 to 5,012,999
_25985
Position (kb) 5011
5012 Strain fitness (log2 ratio) -1
0
1 at 5010.547 kb on - strand at 5010.974 kb on + strand at 5011.248 kb on - strand at 5011.278 kb on + strand at 5011.324 kb on + strand, within OKFHMN_25960 at 5011.431 kb on - strand, within OKFHMN_25960 at 5011.663 kb on - strand, within OKFHMN_25965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,010,547 - -0.7 5,010,974 + -0.2 5,011,248 - -0.7 5,011,278 + -0.8 5,011,324 + OKFHMN_25960 0.31 -0.6 5,011,431 - OKFHMN_25960 0.84 -0.1 5,011,663 - OKFHMN_25965 0.42 -1.4
Or see this region's nucleotide sequence