Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25565

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmsrP and hiuH are separated by 107 nucleotideshiuH and hprR are separated by 21 nucleotideshprR and hprS overlap by 1 nucleotides OKFHMN_25555: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 4,946,109 to 4,947,113 msrP OKFHMN_25560: hiuH - hydroxyisourate hydrolase, at 4,947,221 to 4,947,634 hiuH OKFHMN_25565: hprR - response regulator transcription factor HprR, at 4,947,656 to 4,948,438 hprR OKFHMN_25570: hprS - two-component system sensor histidine kinase HprS, at 4,948,438 to 4,949,796 hprS Position (kb) 4947 4948 4949Strain fitness (log2 ratio) -1 0 1at 4946.867 kb on + strand, within msrPat 4946.868 kb on - strand, within msrPat 4947.078 kb on - strandat 4947.190 kb on + strandat 4947.261 kb on - strandat 4947.392 kb on - strand, within hiuHat 4947.621 kb on + strandat 4947.697 kb on - strandat 4947.707 kb on + strandat 4947.919 kb on + strand, within hprRat 4948.205 kb on - strand, within hprRat 4948.740 kb on - strand, within hprS

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,946,867 + msrP OKFHMN_25555 0.75 -0.8
4,946,868 - msrP OKFHMN_25555 0.76 +0.4
4,947,078 - +1.3
4,947,190 + -0.7
4,947,261 - +0.0
4,947,392 - hiuH OKFHMN_25560 0.41 -0.1
4,947,621 + +1.3
4,947,697 - +0.5
4,947,707 + +0.6
4,947,919 + hprR OKFHMN_25565 0.34 +0.5
4,948,205 - hprR OKFHMN_25565 0.70 +0.7
4,948,740 - hprS OKFHMN_25570 0.22 +1.4

Or see this region's nucleotide sequence