Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25520

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25510 and OKFHMN_25515 are separated by 1 nucleotidesOKFHMN_25515 and tccP are separated by 125 nucleotidestccP and espJ are separated by 324 nucleotides OKFHMN_25510: OKFHMN_25510 - phage tail protein, at 4,938,855 to 4,940,168 _25510 OKFHMN_25515: OKFHMN_25515 - phage tail protein, at 4,940,170 to 4,940,439 _25515 OKFHMN_25520: tccP - Tir-cytoskeleton coupling protein TccP, at 4,940,565 to 4,941,578 tccP OKFHMN_25525: espJ - type III secretion system effector ADP-ribosyltransferase EspJ, at 4,941,903 to 4,942,556 espJ Position (kb) 4940 4941 4942Strain fitness (log2 ratio) -3 -2 -1 0 1at 4941.291 kb on - strand, within tccPat 4941.369 kb on - strand, within tccPat 4941.498 kb on + strandat 4941.617 kb on + strandat 4941.622 kb on - strandat 4941.634 kb on + strandat 4941.802 kb on + strandat 4941.919 kb on + strandat 4941.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,941,291 - tccP OKFHMN_25520 0.72 -1.1
4,941,369 - tccP OKFHMN_25520 0.79 -3.3
4,941,498 + +0.2
4,941,617 + +1.1
4,941,622 - +0.3
4,941,634 + -0.3
4,941,802 + -1.1
4,941,919 + +0.4
4,941,922 - -3.3

Or see this region's nucleotide sequence