Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nac and cbl are separated by 101 nucleotides cbl and Asn_trna are separated by 37 nucleotides Asn_trna and yeeO are separated by 193 nucleotides
OKFHMN_25150: nac - nitrogen assimilation transcriptional regulator NAC, at 4,879,724 to 4,880,641
nac
OKFHMN_25155: cbl - HTH-type transcriptional regulator Cbl, at 4,880,743 to 4,881,693
cbl
OKFHMN_25160: Asn_trna - tRNA-Asn(gtt), at 4,881,731 to 4,881,806
_trna
OKFHMN_25165: yeeO - toxic metabolite efflux MATE transporter YeeO, at 4,882,000 to 4,883,454
yeeO
Position (kb)
4880
4881
4882 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4880.055 kb on + strand, within nac at 4880.055 kb on + strand, within nac at 4880.093 kb on + strand, within nac at 4880.166 kb on - strand, within nac at 4880.527 kb on - strand, within nac at 4880.661 kb on + strand at 4880.705 kb on + strand at 4880.759 kb on + strand at 4880.759 kb on + strand at 4881.012 kb on + strand, within cbl at 4881.061 kb on - strand, within cbl at 4881.286 kb on - strand, within cbl at 4881.403 kb on - strand, within cbl at 4881.404 kb on + strand, within cbl at 4881.404 kb on + strand, within cbl at 4881.405 kb on - strand, within cbl at 4881.439 kb on + strand, within cbl at 4881.544 kb on - strand, within cbl at 4881.586 kb on - strand, within cbl at 4881.589 kb on + strand, within cbl at 4881.691 kb on + strand at 4881.709 kb on - strand at 4881.709 kb on - strand at 4882.066 kb on + strand at 4882.264 kb on - strand, within yeeO at 4882.541 kb on + strand, within yeeO at 4882.548 kb on - strand, within yeeO at 4882.575 kb on + strand, within yeeO at 4882.582 kb on - strand, within yeeO
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,880,055 + nac OKFHMN_25150 0.36 -0.0 4,880,055 + nac OKFHMN_25150 0.36 -0.6 4,880,093 + nac OKFHMN_25150 0.40 -0.3 4,880,166 - nac OKFHMN_25150 0.48 +0.4 4,880,527 - nac OKFHMN_25150 0.87 +0.5 4,880,661 + +0.7 4,880,705 + -0.7 4,880,759 + +0.3 4,880,759 + -1.3 4,881,012 + cbl OKFHMN_25155 0.28 -0.0 4,881,061 - cbl OKFHMN_25155 0.33 -0.3 4,881,286 - cbl OKFHMN_25155 0.57 -0.3 4,881,403 - cbl OKFHMN_25155 0.69 -0.4 4,881,404 + cbl OKFHMN_25155 0.70 -1.9 4,881,404 + cbl OKFHMN_25155 0.70 +1.8 4,881,405 - cbl OKFHMN_25155 0.70 -1.6 4,881,439 + cbl OKFHMN_25155 0.73 -0.4 4,881,544 - cbl OKFHMN_25155 0.84 +0.4 4,881,586 - cbl OKFHMN_25155 0.89 -1.8 4,881,589 + cbl OKFHMN_25155 0.89 -1.5 4,881,691 + +0.1 4,881,709 - +0.4 4,881,709 - +1.4 4,882,066 + +0.3 4,882,264 - yeeO OKFHMN_25165 0.18 -0.8 4,882,541 + yeeO OKFHMN_25165 0.37 +1.2 4,882,548 - yeeO OKFHMN_25165 0.38 +0.1 4,882,575 + yeeO OKFHMN_25165 0.40 +0.2 4,882,582 - yeeO OKFHMN_25165 0.40 +0.2
Or see this region's nucleotide sequence