Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25085 and OKFHMN_25090 overlap by 4 nucleotides OKFHMN_25090 and tnp-IS3 are separated by 177 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and OKFHMN_25105 are separated by 51 nucleotides
OKFHMN_25085: OKFHMN_25085 - chemotaxis protein, at 4,868,169 to 4,869,074
_25085
OKFHMN_25090: OKFHMN_25090 - dGTPase, at 4,869,071 to 4,869,754
_25090
OKFHMN_25095: tnp-IS3 - IS3 family transposase, at 4,869,932 to 4,870,819
tnp-IS3
OKFHMN_25100: tnp-IS3 - IS3 family transposase, at 4,870,819 to 4,871,145
tnp-IS3
OKFHMN_25105: OKFHMN_25105 - TonB-dependent receptor plug domain-containing protein, at 4,871,197 to 4,871,772
_25105
Position (kb)
4869
4870
4871 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4869.826 kb on - strand at 4871.321 kb on + strand, within OKFHMN_25105 at 4871.321 kb on + strand, within OKFHMN_25105 at 4871.377 kb on + strand, within OKFHMN_25105 at 4871.423 kb on - strand, within OKFHMN_25105 at 4871.423 kb on - strand, within OKFHMN_25105 at 4871.512 kb on + strand, within OKFHMN_25105 at 4871.542 kb on - strand, within OKFHMN_25105 at 4871.707 kb on + strand, within OKFHMN_25105 at 4871.758 kb on + strand at 4871.760 kb on + strand at 4871.760 kb on + strand at 4871.763 kb on + strand at 4871.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,869,826 - -0.7 4,871,321 + OKFHMN_25105 0.22 -1.0 4,871,321 + OKFHMN_25105 0.22 -1.8 4,871,377 + OKFHMN_25105 0.31 +0.1 4,871,423 - OKFHMN_25105 0.39 +0.3 4,871,423 - OKFHMN_25105 0.39 +0.3 4,871,512 + OKFHMN_25105 0.55 -1.4 4,871,542 - OKFHMN_25105 0.60 +0.2 4,871,707 + OKFHMN_25105 0.89 -0.9 4,871,758 + -0.3 4,871,760 + -0.1 4,871,760 + -3.1 4,871,763 + +0.6 4,871,788 + -0.4
Or see this region's nucleotide sequence