Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25070 and OKFHMN_25075 are separated by 15 nucleotides OKFHMN_25075 and rssA are separated by 135 nucleotides rssA and OKFHMN_25085 overlap by 4 nucleotides OKFHMN_25085 and OKFHMN_25090 overlap by 4 nucleotides
OKFHMN_25070: OKFHMN_25070 - hypothetical protein, at 4,865,857 to 4,866,267
_25070
OKFHMN_25075: OKFHMN_25075 - hypothetical protein, at 4,866,283 to 4,866,966
_25075
OKFHMN_25080: rssA - phospholipase, at 4,867,102 to 4,868,172
rssA
OKFHMN_25085: OKFHMN_25085 - chemotaxis protein, at 4,868,169 to 4,869,074
_25085
OKFHMN_25090: OKFHMN_25090 - dGTPase, at 4,869,071 to 4,869,754
_25090
Position (kb) 4867
4868
4869 Strain fitness (log2 ratio) -1
0
1
2 at 4866.374 kb on - strand, within OKFHMN_25075 at 4866.419 kb on + strand, within OKFHMN_25075 at 4866.531 kb on + strand, within OKFHMN_25075 at 4866.603 kb on + strand, within OKFHMN_25075 at 4866.618 kb on - strand, within OKFHMN_25075 at 4866.679 kb on - strand, within OKFHMN_25075 at 4866.757 kb on - strand, within OKFHMN_25075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,866,374 - OKFHMN_25075 0.13 +1.7 4,866,419 + OKFHMN_25075 0.20 +2.2 4,866,531 + OKFHMN_25075 0.36 -1.5 4,866,603 + OKFHMN_25075 0.47 +0.2 4,866,618 - OKFHMN_25075 0.49 -0.6 4,866,679 - OKFHMN_25075 0.58 +0.0 4,866,757 - OKFHMN_25075 0.69 -1.7
Or see this region's nucleotide sequence