Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeX and yeeW are separated by 897 nucleotides yeeW and OKFHMN_25040 are separated by 106 nucleotides OKFHMN_25040 and cbtA are separated by 88 nucleotides cbtA and yeeT are separated by 73 nucleotides
OKFHMN_25030: yeeX - DUF496 domain-containing protein, at 4,861,157 to 4,861,486
yeeX
OKFHMN_25035: yeeW - Protein YeeW, at 4,862,384 to 4,862,578
yeeW
OKFHMN_25040: OKFHMN_25040 - toxin of the YeeV-YeeU toxin-antitoxin system, at 4,862,685 to 4,862,948
_25040
OKFHMN_25045: cbtA - type IV toxin-antitoxin system toxin CbtA, at 4,863,037 to 4,863,405
cbtA
OKFHMN_25050: yeeT - Uncharacterized protein YeeT, at 4,863,479 to 4,863,700
yeeT
Position (kb) 4862
4863 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4861.632 kb on - strand at 4862.129 kb on - strand at 4862.320 kb on + strand at 4862.320 kb on + strand at 4862.321 kb on - strand at 4862.363 kb on - strand at 4862.363 kb on - strand at 4862.409 kb on + strand, within yeeW at 4862.482 kb on + strand, within yeeW at 4862.501 kb on - strand, within yeeW at 4862.596 kb on - strand at 4862.700 kb on + strand at 4862.877 kb on + strand, within OKFHMN_25040 at 4862.877 kb on + strand, within OKFHMN_25040 at 4862.975 kb on - strand at 4863.025 kb on + strand at 4863.228 kb on - strand, within cbtA at 4863.511 kb on - strand, within yeeT at 4863.511 kb on - strand, within yeeT
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,861,632 - -0.5 4,862,129 - +1.0 4,862,320 + -0.3 4,862,320 + +0.6 4,862,321 - +3.6 4,862,363 - +0.8 4,862,363 - +0.7 4,862,409 + yeeW OKFHMN_25035 0.13 +0.5 4,862,482 + yeeW OKFHMN_25035 0.50 +0.4 4,862,501 - yeeW OKFHMN_25035 0.60 +0.8 4,862,596 - +0.3 4,862,700 + -1.3 4,862,877 + OKFHMN_25040 0.73 -2.0 4,862,877 + OKFHMN_25040 0.73 +0.4 4,862,975 - +0.4 4,863,025 + +1.1 4,863,228 - cbtA OKFHMN_25045 0.52 +1.0 4,863,511 - yeeT OKFHMN_25050 0.14 -0.5 4,863,511 - yeeT OKFHMN_25050 0.14 -0.6
Or see this region's nucleotide sequence