Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25030

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeA and yeeX are separated by 171 nucleotidesyeeX and yeeW are separated by 897 nucleotides OKFHMN_25025: yeeA - Inner membrane protein YeeA, at 4,859,927 to 4,860,985 yeeA OKFHMN_25030: yeeX - DUF496 domain-containing protein, at 4,861,157 to 4,861,486 yeeX OKFHMN_25035: yeeW - Protein YeeW, at 4,862,384 to 4,862,578 yeeW Position (kb) 4861 4862Strain fitness (log2 ratio) -1 0 1at 4860.470 kb on - strand, within yeeAat 4860.618 kb on - strand, within yeeAat 4860.680 kb on + strand, within yeeAat 4860.793 kb on + strand, within yeeAat 4860.866 kb on - strand, within yeeAat 4860.902 kb on + strandat 4860.902 kb on + strandat 4860.908 kb on + strandat 4861.089 kb on + strandat 4861.089 kb on + strandat 4861.108 kb on + strandat 4861.119 kb on + strandat 4861.165 kb on + strandat 4861.632 kb on - strandat 4862.129 kb on - strandat 4862.320 kb on + strandat 4862.320 kb on + strandat 4862.363 kb on - strandat 4862.409 kb on + strand, within yeeWat 4862.482 kb on + strand, within yeeW

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,860,470 - yeeA OKFHMN_25025 0.51 +0.4
4,860,618 - yeeA OKFHMN_25025 0.65 -0.3
4,860,680 + yeeA OKFHMN_25025 0.71 -0.7
4,860,793 + yeeA OKFHMN_25025 0.82 +0.6
4,860,866 - yeeA OKFHMN_25025 0.89 +0.1
4,860,902 + +0.2
4,860,902 + +0.4
4,860,908 + -1.3
4,861,089 + +0.3
4,861,089 + +0.4
4,861,108 + -0.2
4,861,119 + +0.9
4,861,165 + +0.5
4,861,632 - -0.5
4,862,129 - +1.0
4,862,320 + -0.3
4,862,320 + +0.6
4,862,363 - +0.8
4,862,409 + yeeW OKFHMN_25035 0.13 +0.5
4,862,482 + yeeW OKFHMN_25035 0.50 +0.4

Or see this region's nucleotide sequence