Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24825 and OKFHMN_24830 are separated by 136 nucleotides OKFHMN_24830 and OKFHMN_24835 are separated by 40 nucleotides OKFHMN_24835 and OKFHMN_24840 are separated by 76 nucleotides OKFHMN_24840 and rrrD overlap by 1 nucleotides rrrD and OKFHMN_24850 overlap by 4 nucleotides
OKFHMN_24825: OKFHMN_24825 - sialate O-acetylesterase, at 4,823,971 to 4,825,908
_24825
OKFHMN_24830: OKFHMN_24830 - DUF1378 domain-containing protein, at 4,826,045 to 4,826,224
_24830
OKFHMN_24835: OKFHMN_24835 - DUF826 domain-containing protein, at 4,826,265 to 4,826,537
_24835
OKFHMN_24840: OKFHMN_24840 - holin, at 4,826,614 to 4,826,829
_24840
OKFHMN_24845: rrrD - lysozyme RrrD, at 4,826,829 to 4,827,326
rrrD
OKFHMN_24850: OKFHMN_24850 - lysis protein, at 4,827,323 to 4,827,760
_24850
Position (kb) 4826
4827 Strain fitness (log2 ratio) -2
-1
0
1 at 4826.450 kb on + strand, within OKFHMN_24835 at 4826.618 kb on - strand at 4827.359 kb on - strand at 4827.359 kb on - strand at 4827.571 kb on + strand, within OKFHMN_24850 at 4827.652 kb on + strand, within OKFHMN_24850 at 4827.652 kb on + strand, within OKFHMN_24850 at 4827.653 kb on - strand, within OKFHMN_24850 at 4827.674 kb on + strand, within OKFHMN_24850 at 4827.706 kb on - strand, within OKFHMN_24850
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,826,450 + OKFHMN_24835 0.68 +1.0 4,826,618 - -1.1 4,827,359 - -1.7 4,827,359 - -0.4 4,827,571 + OKFHMN_24850 0.57 -2.1 4,827,652 + OKFHMN_24850 0.75 +0.3 4,827,652 + OKFHMN_24850 0.75 -0.3 4,827,653 - OKFHMN_24850 0.75 +1.0 4,827,674 + OKFHMN_24850 0.80 -1.2 4,827,706 - OKFHMN_24850 0.87 -1.4
Or see this region's nucleotide sequence