Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24605 and OKFHMN_24610 overlap by 4 nucleotides OKFHMN_24610 and OKFHMN_24615 are separated by 98 nucleotides OKFHMN_24615 and OKFHMN_24620 overlap by 4 nucleotides OKFHMN_24620 and OKFHMN_24625 overlap by 4 nucleotides OKFHMN_24625 and OKFHMN_24630 overlap by 28 nucleotides OKFHMN_24630 and exoD overlap by 4 nucleotides exoD and bet overlap by 4 nucleotides bet and gam are separated by 5 nucleotides
OKFHMN_24605: OKFHMN_24605 - ead/Ea22-like family protein, at 4,803,878 to 4,804,825
_24605
OKFHMN_24610: OKFHMN_24610 - conjugal transfer protein TraR, at 4,804,822 to 4,805,043
_24610
OKFHMN_24615: OKFHMN_24615 - Cell division protein ZapA, at 4,805,142 to 4,805,357
_24615
OKFHMN_24620: OKFHMN_24620 - DUF1382 domain-containing protein, at 4,805,354 to 4,805,437
_24620
OKFHMN_24625: OKFHMN_24625 - DUF1382 domain-containing protein, at 4,805,434 to 4,805,625
_24625
OKFHMN_24630: OKFHMN_24630 - cruciferin, at 4,805,598 to 4,805,780
_24630
OKFHMN_24635: exoD - Putative uncharacterized protein ExoD, at 4,805,777 to 4,806,457
exoD
OKFHMN_24640: bet - phage recombination protein Bet, at 4,806,454 to 4,807,239
bet
OKFHMN_24645: gam - Host-nuclease inhibitor protein gam, at 4,807,245 to 4,807,541
gam
Position (kb) 4805
4806
4807 Strain fitness (log2 ratio) -2
-1
0
1 at 4804.993 kb on - strand, within OKFHMN_24610 at 4805.071 kb on - strand at 4805.187 kb on + strand, within OKFHMN_24615 at 4805.396 kb on + strand, within OKFHMN_24620 at 4805.396 kb on + strand, within OKFHMN_24620 at 4805.539 kb on + strand, within OKFHMN_24625 at 4805.625 kb on + strand at 4805.647 kb on - strand, within OKFHMN_24630 at 4805.901 kb on + strand, within exoD at 4805.935 kb on - strand, within exoD at 4806.139 kb on - strand, within exoD at 4806.139 kb on - strand, within exoD at 4807.233 kb on + strand at 4807.233 kb on + strand at 4807.247 kb on - strand at 4807.247 kb on - strand at 4807.247 kb on - strand at 4807.249 kb on - strand at 4807.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,804,993 - OKFHMN_24610 0.77 +0.2 4,805,071 - -0.6 4,805,187 + OKFHMN_24615 0.21 +1.1 4,805,396 + OKFHMN_24620 0.50 +0.4 4,805,396 + OKFHMN_24620 0.50 +0.7 4,805,539 + OKFHMN_24625 0.55 -2.1 4,805,625 + +0.1 4,805,647 - OKFHMN_24630 0.27 +0.2 4,805,901 + exoD OKFHMN_24635 0.18 -2.4 4,805,935 - exoD OKFHMN_24635 0.23 -2.7 4,806,139 - exoD OKFHMN_24635 0.53 -0.5 4,806,139 - exoD OKFHMN_24635 0.53 -0.8 4,807,233 + -0.1 4,807,233 + -0.1 4,807,247 - -1.6 4,807,247 - -0.6 4,807,247 - -0.4 4,807,249 - +0.4 4,807,249 - +0.1
Or see this region's nucleotide sequence