Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24440

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaB and OKFHMN_24440 are separated by 19 nucleotidesOKFHMN_24440 and wcaG are separated by 2 nucleotideswcaG and wbdQ are separated by 2 nucleotides OKFHMN_24435: rfaB - glycosyl transferase, at 4,773,698 to 4,774,912 rfaB OKFHMN_24440: OKFHMN_24440 - GDP-mannose 4,6-dehydratase, at 4,774,932 to 4,776,050 _24440 OKFHMN_24445: wcaG - GDP-fucose synthetase, at 4,776,053 to 4,777,018 wcaG OKFHMN_24450: wbdQ - GDP-mannose mannosyl hydrolase WbdQ/WbhG, at 4,777,021 to 4,777,530 wbdQ Position (kb) 4774 4775 4776 4777Strain fitness (log2 ratio) -2 -1 0 1at 4774.573 kb on + strand, within rfaBat 4775.479 kb on + strand, within OKFHMN_24440at 4775.747 kb on + strand, within OKFHMN_24440at 4776.037 kb on + strandat 4776.293 kb on + strand, within wcaGat 4776.427 kb on - strand, within wcaGat 4776.687 kb on + strand, within wcaGat 4776.742 kb on + strand, within wcaGat 4776.848 kb on + strand, within wcaGat 4776.850 kb on + strand, within wcaG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,774,573 + rfaB OKFHMN_24435 0.72 +1.0
4,775,479 + OKFHMN_24440 0.49 +0.7
4,775,747 + OKFHMN_24440 0.73 +1.4
4,776,037 + -0.0
4,776,293 + wcaG OKFHMN_24445 0.25 -1.4
4,776,427 - wcaG OKFHMN_24445 0.39 +1.0
4,776,687 + wcaG OKFHMN_24445 0.66 -1.3
4,776,742 + wcaG OKFHMN_24445 0.71 -1.5
4,776,848 + wcaG OKFHMN_24445 0.82 -2.4
4,776,850 + wcaG OKFHMN_24445 0.83 -2.2

Or see this region's nucleotide sequence