Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24410

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalF and wcaA are separated by 318 nucleotideswcaA and wzy overlap by 4 nucleotides OKFHMN_24405: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 4,767,308 to 4,768,201 galF OKFHMN_24410: wcaA - glycosyl transferase, at 4,768,520 to 4,769,302 wcaA OKFHMN_24415: wzy - O157 family O-antigen polymerase, at 4,769,299 to 4,770,483 wzy Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -1 0 1 2at 4767.573 kb on + strand, within galFat 4767.580 kb on + strand, within galFat 4767.580 kb on + strand, within galFat 4767.950 kb on + strand, within galFat 4768.012 kb on + strand, within galFat 4768.112 kb on + strandat 4768.141 kb on - strandat 4768.307 kb on + strandat 4768.336 kb on + strandat 4770.247 kb on + strand, within wzy

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,767,573 + galF OKFHMN_24405 0.30 +0.6
4,767,580 + galF OKFHMN_24405 0.30 +0.4
4,767,580 + galF OKFHMN_24405 0.30 -0.2
4,767,950 + galF OKFHMN_24405 0.72 -0.0
4,768,012 + galF OKFHMN_24405 0.79 +2.0
4,768,112 + -0.3
4,768,141 - +0.1
4,768,307 + -0.7
4,768,336 + +0.3
4,770,247 + wzy OKFHMN_24415 0.80 +1.8

Or see this region's nucleotide sequence