Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wcaE and wcaF are separated by 15 nucleotides wcaF and OKFHMN_24345 are separated by 28 nucleotides OKFHMN_24345 and fcl are separated by 2 nucleotides fcl and gmm overlap by 1 nucleotides
OKFHMN_24335: wcaE - colanic acid biosynthesis glycosyltransferase WcaE, at 4,750,769 to 4,751,515
wcaE
OKFHMN_24340: wcaF - colanic acid biosynthesis acetyltransferase WcaF, at 4,751,531 to 4,752,079
wcaF
OKFHMN_24345: OKFHMN_24345 - GDP-mannose 4,6-dehydratase, at 4,752,108 to 4,753,229
_24345
OKFHMN_24350: fcl - GDP-L-fucose synthase, at 4,753,232 to 4,754,197
fcl
OKFHMN_24355: gmm - GDP-mannose mannosyl hydrolase, at 4,754,197 to 4,754,679
gmm
Position (kb) 4752
4753
4754 Strain fitness (log2 ratio) -1
0
1 at 4751.789 kb on + strand, within wcaF at 4751.843 kb on + strand, within wcaF at 4751.847 kb on + strand, within wcaF at 4752.093 kb on - strand at 4752.411 kb on - strand, within OKFHMN_24345 at 4752.594 kb on + strand, within OKFHMN_24345 at 4752.594 kb on + strand, within OKFHMN_24345 at 4752.639 kb on + strand, within OKFHMN_24345 at 4752.639 kb on + strand, within OKFHMN_24345 at 4752.640 kb on - strand, within OKFHMN_24345 at 4752.640 kb on - strand, within OKFHMN_24345 at 4752.640 kb on - strand, within OKFHMN_24345 at 4752.640 kb on - strand, within OKFHMN_24345 at 4752.640 kb on - strand, within OKFHMN_24345 at 4752.756 kb on + strand, within OKFHMN_24345 at 4752.756 kb on + strand, within OKFHMN_24345 at 4752.805 kb on - strand, within OKFHMN_24345 at 4753.227 kb on + strand at 4753.227 kb on + strand at 4753.228 kb on - strand at 4753.409 kb on + strand, within fcl at 4753.410 kb on - strand, within fcl at 4753.680 kb on - strand, within fcl at 4754.068 kb on + strand, within fcl at 4754.156 kb on + strand at 4754.156 kb on + strand at 4754.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,751,789 + wcaF OKFHMN_24340 0.47 -0.2 4,751,843 + wcaF OKFHMN_24340 0.57 +0.5 4,751,847 + wcaF OKFHMN_24340 0.58 -0.3 4,752,093 - +1.2 4,752,411 - OKFHMN_24345 0.27 +0.5 4,752,594 + OKFHMN_24345 0.43 -0.1 4,752,594 + OKFHMN_24345 0.43 -1.1 4,752,639 + OKFHMN_24345 0.47 -0.5 4,752,639 + OKFHMN_24345 0.47 -0.0 4,752,640 - OKFHMN_24345 0.47 -0.2 4,752,640 - OKFHMN_24345 0.47 -0.5 4,752,640 - OKFHMN_24345 0.47 +0.0 4,752,640 - OKFHMN_24345 0.47 +1.5 4,752,640 - OKFHMN_24345 0.47 -0.9 4,752,756 + OKFHMN_24345 0.58 -0.1 4,752,756 + OKFHMN_24345 0.58 -0.5 4,752,805 - OKFHMN_24345 0.62 -0.2 4,753,227 + +0.1 4,753,227 + +0.1 4,753,228 - -1.4 4,753,409 + fcl OKFHMN_24350 0.18 +0.5 4,753,410 - fcl OKFHMN_24350 0.18 -1.5 4,753,680 - fcl OKFHMN_24350 0.46 +0.3 4,754,068 + fcl OKFHMN_24350 0.87 +0.3 4,754,156 + +0.4 4,754,156 + +0.0 4,754,207 + -0.2
Or see this region's nucleotide sequence