Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dld and bglX are separated by 225 nucleotides bglX and osmF are separated by 251 nucleotides
OKFHMN_23650: dld - D-lactate dehydrogenase, at 4,620,544 to 4,622,259
dld
OKFHMN_23655: bglX - beta-glucosidase BglX, at 4,622,485 to 4,624,752
bglX
OKFHMN_23660: osmF - glycine betaine ABC transporter substrate-binding protein OsmF, at 4,625,004 to 4,625,921
osmF
Position (kb) 4622
4623
4624
4625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4621.531 kb on - strand, within dld at 4621.532 kb on + strand, within dld at 4621.577 kb on + strand, within dld at 4621.577 kb on + strand, within dld at 4621.751 kb on + strand, within dld at 4621.788 kb on + strand, within dld at 4621.788 kb on + strand, within dld at 4621.954 kb on + strand, within dld at 4621.954 kb on + strand, within dld at 4621.954 kb on + strand, within dld at 4621.954 kb on + strand, within dld at 4621.955 kb on - strand, within dld at 4621.985 kb on + strand, within dld at 4621.986 kb on - strand, within dld at 4622.046 kb on + strand, within dld at 4622.233 kb on - strand at 4622.312 kb on + strand at 4622.312 kb on + strand at 4622.455 kb on - strand at 4622.622 kb on - strand at 4622.782 kb on + strand, within bglX at 4622.783 kb on - strand, within bglX at 4622.844 kb on + strand, within bglX at 4622.911 kb on - strand, within bglX at 4622.985 kb on + strand, within bglX at 4622.989 kb on + strand, within bglX at 4622.989 kb on + strand, within bglX at 4622.990 kb on - strand, within bglX at 4623.160 kb on + strand, within bglX at 4623.162 kb on + strand, within bglX at 4623.340 kb on - strand, within bglX at 4623.422 kb on - strand, within bglX at 4623.425 kb on - strand, within bglX at 4623.515 kb on - strand, within bglX at 4623.541 kb on + strand, within bglX at 4623.541 kb on + strand, within bglX at 4623.793 kb on - strand, within bglX at 4624.219 kb on + strand, within bglX at 4624.283 kb on - strand, within bglX at 4624.309 kb on + strand, within bglX at 4624.310 kb on - strand, within bglX at 4624.396 kb on + strand, within bglX at 4624.397 kb on - strand, within bglX at 4624.669 kb on + strand at 4624.670 kb on - strand at 4625.161 kb on + strand, within osmF at 4625.217 kb on - strand, within osmF at 4625.247 kb on + strand, within osmF at 4625.356 kb on + strand, within osmF at 4625.356 kb on + strand, within osmF at 4625.461 kb on - strand, within osmF at 4625.575 kb on + strand, within osmF at 4625.659 kb on - strand, within osmF at 4625.726 kb on + strand, within osmF at 4625.727 kb on - strand, within osmF
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,621,531 - dld OKFHMN_23650 0.58 -1.5 4,621,532 + dld OKFHMN_23650 0.58 -1.7 4,621,577 + dld OKFHMN_23650 0.60 +0.2 4,621,577 + dld OKFHMN_23650 0.60 +0.3 4,621,751 + dld OKFHMN_23650 0.70 +0.1 4,621,788 + dld OKFHMN_23650 0.72 -0.4 4,621,788 + dld OKFHMN_23650 0.72 -1.4 4,621,954 + dld OKFHMN_23650 0.82 -2.1 4,621,954 + dld OKFHMN_23650 0.82 +0.2 4,621,954 + dld OKFHMN_23650 0.82 -0.3 4,621,954 + dld OKFHMN_23650 0.82 -0.6 4,621,955 - dld OKFHMN_23650 0.82 +0.2 4,621,985 + dld OKFHMN_23650 0.84 +2.0 4,621,986 - dld OKFHMN_23650 0.84 -0.1 4,622,046 + dld OKFHMN_23650 0.88 +1.0 4,622,233 - -0.4 4,622,312 + -0.6 4,622,312 + +0.9 4,622,455 - +0.4 4,622,622 - +1.2 4,622,782 + bglX OKFHMN_23655 0.13 -0.3 4,622,783 - bglX OKFHMN_23655 0.13 +0.3 4,622,844 + bglX OKFHMN_23655 0.16 +0.4 4,622,911 - bglX OKFHMN_23655 0.19 +2.4 4,622,985 + bglX OKFHMN_23655 0.22 +1.0 4,622,989 + bglX OKFHMN_23655 0.22 +0.5 4,622,989 + bglX OKFHMN_23655 0.22 +0.7 4,622,990 - bglX OKFHMN_23655 0.22 +0.7 4,623,160 + bglX OKFHMN_23655 0.30 +0.3 4,623,162 + bglX OKFHMN_23655 0.30 +0.6 4,623,340 - bglX OKFHMN_23655 0.38 -3.0 4,623,422 - bglX OKFHMN_23655 0.41 -0.0 4,623,425 - bglX OKFHMN_23655 0.41 +0.7 4,623,515 - bglX OKFHMN_23655 0.45 -0.2 4,623,541 + bglX OKFHMN_23655 0.47 -0.1 4,623,541 + bglX OKFHMN_23655 0.47 -0.9 4,623,793 - bglX OKFHMN_23655 0.58 -0.3 4,624,219 + bglX OKFHMN_23655 0.76 -1.0 4,624,283 - bglX OKFHMN_23655 0.79 +0.6 4,624,309 + bglX OKFHMN_23655 0.80 +0.5 4,624,310 - bglX OKFHMN_23655 0.80 +0.3 4,624,396 + bglX OKFHMN_23655 0.84 -0.8 4,624,397 - bglX OKFHMN_23655 0.84 -0.1 4,624,669 + +0.2 4,624,670 - -0.2 4,625,161 + osmF OKFHMN_23660 0.17 +2.3 4,625,217 - osmF OKFHMN_23660 0.23 -0.2 4,625,247 + osmF OKFHMN_23660 0.26 +0.4 4,625,356 + osmF OKFHMN_23660 0.38 -1.5 4,625,356 + osmF OKFHMN_23660 0.38 -1.0 4,625,461 - osmF OKFHMN_23660 0.50 +0.6 4,625,575 + osmF OKFHMN_23660 0.62 +0.1 4,625,659 - osmF OKFHMN_23660 0.71 +0.1 4,625,726 + osmF OKFHMN_23660 0.79 +1.1 4,625,727 - osmF OKFHMN_23660 0.79 -0.7
Or see this region's nucleotide sequence