Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23515

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyeiG and folE are separated by 257 nucleotidesfolE and yeiB are separated by 16 nucleotides OKFHMN_23510: yeiG - S-formylglutathione hydrolase, at 4,593,618 to 4,594,454 yeiG OKFHMN_23515: folE - GTP cyclohydrolase I FolE, at 4,594,712 to 4,595,380 folE OKFHMN_23520: yeiB - Uncharacterized protein YeiB, at 4,595,397 to 4,596,554 yeiB Position (kb) 4594 4595 4596Strain fitness (log2 ratio) -2 -1 0 1 2at 4593.754 kb on - strand, within yeiGat 4593.842 kb on - strand, within yeiGat 4593.892 kb on - strand, within yeiGat 4593.903 kb on - strand, within yeiGat 4594.056 kb on - strand, within yeiGat 4594.096 kb on + strand, within yeiGat 4594.097 kb on - strand, within yeiGat 4594.102 kb on + strand, within yeiGat 4594.103 kb on - strand, within yeiGat 4594.142 kb on + strand, within yeiGat 4594.167 kb on + strand, within yeiGat 4594.362 kb on - strand, within yeiGat 4594.384 kb on - strandat 4594.384 kb on - strandat 4594.656 kb on + strandat 4595.384 kb on - strandat 4595.455 kb on + strandat 4595.499 kb on - strandat 4595.685 kb on - strand, within yeiBat 4595.792 kb on + strand, within yeiBat 4596.191 kb on - strand, within yeiBat 4596.282 kb on - strand, within yeiBat 4596.330 kb on + strand, within yeiBat 4596.334 kb on + strand, within yeiB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,593,754 - yeiG OKFHMN_23510 0.16 -0.2
4,593,842 - yeiG OKFHMN_23510 0.27 -0.1
4,593,892 - yeiG OKFHMN_23510 0.33 -0.0
4,593,903 - yeiG OKFHMN_23510 0.34 +0.9
4,594,056 - yeiG OKFHMN_23510 0.52 -0.6
4,594,096 + yeiG OKFHMN_23510 0.57 -0.3
4,594,097 - yeiG OKFHMN_23510 0.57 -0.6
4,594,102 + yeiG OKFHMN_23510 0.58 -0.1
4,594,103 - yeiG OKFHMN_23510 0.58 +0.6
4,594,142 + yeiG OKFHMN_23510 0.63 +1.9
4,594,167 + yeiG OKFHMN_23510 0.66 -0.6
4,594,362 - yeiG OKFHMN_23510 0.89 +0.1
4,594,384 - -0.5
4,594,384 - +0.6
4,594,656 + -0.3
4,595,384 - -0.6
4,595,455 + -2.2
4,595,499 - -1.0
4,595,685 - yeiB OKFHMN_23520 0.25 +1.3
4,595,792 + yeiB OKFHMN_23520 0.34 -1.3
4,596,191 - yeiB OKFHMN_23520 0.69 -0.2
4,596,282 - yeiB OKFHMN_23520 0.76 -1.0
4,596,330 + yeiB OKFHMN_23520 0.81 -0.3
4,596,334 + yeiB OKFHMN_23520 0.81 +1.1

Or see this region's nucleotide sequence