Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhmD and OKFHMN_23030 are separated by 56 nucleotides OKFHMN_23030 and OKFHMN_23035 overlap by 47 nucleotides OKFHMN_23035 and yfaU are separated by 67 nucleotides yfaU and yfaD are separated by 40 nucleotides
OKFHMN_23025: rhmD - L-rhamnonate dehydratase, at 4,482,742 to 4,483,947
rhmD
OKFHMN_23030: OKFHMN_23030 - MFS transporter, at 4,484,004 to 4,484,549
_23030
OKFHMN_23035: OKFHMN_23035 - MFS transporter, at 4,484,503 to 4,485,294
_23035
OKFHMN_23040: yfaU - 2-keto-3-deoxy-L-rhamnonate aldolase, at 4,485,362 to 4,486,114
yfaU
OKFHMN_23045: yfaD - ISNCY family transposase, at 4,486,155 to 4,487,081
yfaD
Position (kb) 4484
4485
4486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4483.507 kb on + strand, within rhmD at 4483.655 kb on + strand, within rhmD at 4483.864 kb on - strand at 4483.884 kb on + strand at 4483.987 kb on - strand at 4483.991 kb on + strand at 4483.992 kb on - strand at 4484.064 kb on - strand, within OKFHMN_23030 at 4484.076 kb on + strand, within OKFHMN_23030 at 4484.076 kb on + strand, within OKFHMN_23030 at 4484.077 kb on - strand, within OKFHMN_23030 at 4484.127 kb on + strand, within OKFHMN_23030 at 4484.151 kb on - strand, within OKFHMN_23030 at 4484.161 kb on - strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.191 kb on + strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.192 kb on - strand, within OKFHMN_23030 at 4484.193 kb on + strand, within OKFHMN_23030 at 4484.329 kb on + strand, within OKFHMN_23030 at 4484.375 kb on + strand, within OKFHMN_23030 at 4484.382 kb on + strand, within OKFHMN_23030 at 4484.426 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.439 kb on + strand, within OKFHMN_23030 at 4484.440 kb on - strand, within OKFHMN_23030 at 4484.922 kb on + strand, within OKFHMN_23035 at 4485.297 kb on - strand at 4485.297 kb on - strand at 4485.323 kb on - strand at 4485.325 kb on + strand at 4485.337 kb on + strand at 4485.338 kb on - strand at 4485.398 kb on + strand at 4485.398 kb on + strand at 4485.399 kb on - strand at 4485.399 kb on - strand at 4485.399 kb on - strand at 4485.400 kb on + strand at 4485.400 kb on + strand at 4485.509 kb on + strand, within yfaU at 4485.560 kb on - strand, within yfaU at 4485.591 kb on + strand, within yfaU at 4485.723 kb on - strand, within yfaU at 4485.723 kb on - strand, within yfaU at 4485.773 kb on - strand, within yfaU at 4485.905 kb on - strand, within yfaU at 4485.973 kb on + strand, within yfaU at 4486.099 kb on - strand at 4486.153 kb on - strand at 4486.153 kb on - strand at 4486.256 kb on + strand, within yfaD at 4486.257 kb on - strand, within yfaD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,483,507 + rhmD OKFHMN_23025 0.63 +0.5 4,483,655 + rhmD OKFHMN_23025 0.76 -0.6 4,483,864 - +0.0 4,483,884 + +0.4 4,483,987 - -0.7 4,483,991 + -0.4 4,483,992 - -1.3 4,484,064 - OKFHMN_23030 0.11 +0.3 4,484,076 + OKFHMN_23030 0.13 -0.1 4,484,076 + OKFHMN_23030 0.13 -1.1 4,484,077 - OKFHMN_23030 0.13 -0.2 4,484,127 + OKFHMN_23030 0.23 +0.7 4,484,151 - OKFHMN_23030 0.27 +0.7 4,484,161 - OKFHMN_23030 0.29 +0.4 4,484,191 + OKFHMN_23030 0.34 +0.5 4,484,191 + OKFHMN_23030 0.34 +0.1 4,484,191 + OKFHMN_23030 0.34 +0.2 4,484,191 + OKFHMN_23030 0.34 +2.3 4,484,191 + OKFHMN_23030 0.34 -0.6 4,484,192 - OKFHMN_23030 0.34 +0.6 4,484,192 - OKFHMN_23030 0.34 +0.3 4,484,192 - OKFHMN_23030 0.34 +1.5 4,484,193 + OKFHMN_23030 0.35 -0.3 4,484,329 + OKFHMN_23030 0.60 +0.1 4,484,375 + OKFHMN_23030 0.68 +0.0 4,484,382 + OKFHMN_23030 0.69 -0.8 4,484,426 + OKFHMN_23030 0.77 -0.0 4,484,439 + OKFHMN_23030 0.80 +1.1 4,484,439 + OKFHMN_23030 0.80 -0.2 4,484,439 + OKFHMN_23030 0.80 -0.1 4,484,439 + OKFHMN_23030 0.80 -3.8 4,484,440 - OKFHMN_23030 0.80 +0.6 4,484,922 + OKFHMN_23035 0.53 -0.8 4,485,297 - -0.7 4,485,297 - -0.3 4,485,323 - -1.0 4,485,325 + +0.0 4,485,337 + +0.2 4,485,338 - -0.6 4,485,398 + -0.4 4,485,398 + +0.5 4,485,399 - +1.1 4,485,399 - -2.2 4,485,399 - -0.7 4,485,400 + +0.5 4,485,400 + +0.2 4,485,509 + yfaU OKFHMN_23040 0.20 -1.6 4,485,560 - yfaU OKFHMN_23040 0.26 +0.7 4,485,591 + yfaU OKFHMN_23040 0.30 -0.6 4,485,723 - yfaU OKFHMN_23040 0.48 +0.3 4,485,723 - yfaU OKFHMN_23040 0.48 +0.6 4,485,773 - yfaU OKFHMN_23040 0.55 -0.5 4,485,905 - yfaU OKFHMN_23040 0.72 +0.0 4,485,973 + yfaU OKFHMN_23040 0.81 -0.0 4,486,099 - +0.2 4,486,153 - -0.8 4,486,153 - +0.3 4,486,256 + yfaD OKFHMN_23045 0.11 -0.2 4,486,257 - yfaD OKFHMN_23045 0.11 -1.4
Or see this region's nucleotide sequence