Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfdV and OKFHMN_22415 are separated by 73 nucleotides OKFHMN_22415 and yfdE are separated by 32 nucleotides yfdE and evgS are separated by 55 nucleotides
OKFHMN_22410: yfdV - transporter YfdV, at 4,356,261 to 4,357,205
yfdV
OKFHMN_22415: OKFHMN_22415 - CoA-transferase, at 4,357,279 to 4,357,509
_22415
OKFHMN_22420: yfdE - CoA:oxalate CoA-transferase, at 4,357,542 to 4,358,420
yfdE
OKFHMN_22425: evgS - acid-sensing system histidine kinase EvgS, at 4,358,476 to 4,362,069
evgS
Position (kb) 4357
4358
4359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4356.556 kb on + strand, within yfdV at 4356.618 kb on - strand, within yfdV at 4356.660 kb on - strand, within yfdV at 4356.878 kb on + strand, within yfdV at 4356.879 kb on - strand, within yfdV at 4356.957 kb on - strand, within yfdV at 4357.007 kb on + strand, within yfdV at 4357.049 kb on - strand, within yfdV at 4357.063 kb on + strand, within yfdV at 4357.207 kb on + strand at 4357.319 kb on + strand, within OKFHMN_22415 at 4357.320 kb on - strand, within OKFHMN_22415 at 4357.377 kb on + strand, within OKFHMN_22415 at 4357.645 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.795 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.977 kb on + strand, within yfdE at 4358.153 kb on + strand, within yfdE at 4358.236 kb on + strand, within yfdE at 4358.305 kb on + strand, within yfdE at 4358.597 kb on - strand at 4358.608 kb on - strand at 4358.682 kb on + strand at 4358.728 kb on - strand at 4358.860 kb on + strand, within evgS at 4358.875 kb on + strand, within evgS at 4358.905 kb on + strand, within evgS at 4358.906 kb on - strand, within evgS at 4359.051 kb on + strand, within evgS at 4359.127 kb on + strand, within evgS at 4359.155 kb on - strand, within evgS
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,356,556 + yfdV OKFHMN_22410 0.31 +0.4 4,356,618 - yfdV OKFHMN_22410 0.38 -0.4 4,356,660 - yfdV OKFHMN_22410 0.42 -0.3 4,356,878 + yfdV OKFHMN_22410 0.65 +0.2 4,356,879 - yfdV OKFHMN_22410 0.65 +2.0 4,356,957 - yfdV OKFHMN_22410 0.74 +0.3 4,357,007 + yfdV OKFHMN_22410 0.79 +1.0 4,357,049 - yfdV OKFHMN_22410 0.83 +0.3 4,357,063 + yfdV OKFHMN_22410 0.85 -0.5 4,357,207 + +0.1 4,357,319 + OKFHMN_22415 0.17 +0.9 4,357,320 - OKFHMN_22415 0.18 +0.2 4,357,377 + OKFHMN_22415 0.42 +0.2 4,357,645 + yfdE OKFHMN_22420 0.12 +0.1 4,357,647 + yfdE OKFHMN_22420 0.12 -0.3 4,357,647 + yfdE OKFHMN_22420 0.12 +0.3 4,357,795 + yfdE OKFHMN_22420 0.29 +0.2 4,357,931 + yfdE OKFHMN_22420 0.44 -0.2 4,357,931 + yfdE OKFHMN_22420 0.44 +0.5 4,357,977 + yfdE OKFHMN_22420 0.49 +0.2 4,358,153 + yfdE OKFHMN_22420 0.70 +0.4 4,358,236 + yfdE OKFHMN_22420 0.79 +2.5 4,358,305 + yfdE OKFHMN_22420 0.87 -0.4 4,358,597 - +0.3 4,358,608 - +1.2 4,358,682 + +0.8 4,358,728 - +0.6 4,358,860 + evgS OKFHMN_22425 0.11 +0.2 4,358,875 + evgS OKFHMN_22425 0.11 -0.0 4,358,905 + evgS OKFHMN_22425 0.12 -2.9 4,358,906 - evgS OKFHMN_22425 0.12 +0.2 4,359,051 + evgS OKFHMN_22425 0.16 +1.0 4,359,127 + evgS OKFHMN_22425 0.18 -0.9 4,359,155 - evgS OKFHMN_22425 0.19 +0.1
Or see this region's nucleotide sequence