Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdxK and crr are separated by 42 nucleotides crr and ptsI are separated by 40 nucleotides ptsI and ptsH are separated by 44 nucleotides ptsH and cysK are separated by 383 nucleotides
OKFHMN_22180: pdxK - pyridoxine/pyridoxal/pyridoxamine kinase, at 4,312,951 to 4,313,802
pdxK
OKFHMN_22185: crr - PTS glucose transporter subunit IIA, at 4,313,845 to 4,314,354
crr
OKFHMN_22190: ptsI - phosphoenolpyruvate-protein phosphotransferase PtsI, at 4,314,395 to 4,316,122
ptsI
OKFHMN_22195: ptsH - phosphocarrier protein Hpr, at 4,316,167 to 4,316,424
ptsH
OKFHMN_22200: cysK - cysteine synthase A, at 4,316,808 to 4,317,779
cysK
Position (kb) 4314
4315
4316
4317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4313.516 kb on + strand, within pdxK at 4313.621 kb on + strand, within pdxK at 4313.801 kb on - strand at 4313.846 kb on + strand at 4313.953 kb on - strand, within crr at 4314.365 kb on + strand at 4314.366 kb on - strand at 4314.659 kb on - strand, within ptsI at 4314.703 kb on - strand, within ptsI at 4314.747 kb on + strand, within ptsI at 4314.747 kb on + strand, within ptsI at 4314.748 kb on - strand, within ptsI at 4314.748 kb on - strand, within ptsI at 4314.897 kb on + strand, within ptsI at 4314.958 kb on + strand, within ptsI at 4315.092 kb on + strand, within ptsI at 4315.092 kb on + strand, within ptsI at 4315.093 kb on - strand, within ptsI at 4315.239 kb on + strand, within ptsI at 4315.310 kb on + strand, within ptsI at 4315.311 kb on - strand, within ptsI at 4315.311 kb on - strand, within ptsI at 4315.339 kb on + strand, within ptsI at 4315.473 kb on + strand, within ptsI at 4315.891 kb on + strand, within ptsI at 4315.892 kb on - strand, within ptsI at 4315.895 kb on - strand, within ptsI at 4316.134 kb on - strand at 4316.134 kb on - strand at 4316.326 kb on - strand, within ptsH at 4316.347 kb on - strand, within ptsH at 4316.442 kb on + strand at 4316.496 kb on - strand at 4316.496 kb on - strand at 4316.542 kb on + strand at 4316.597 kb on + strand at 4316.598 kb on - strand at 4316.666 kb on - strand at 4316.683 kb on + strand at 4317.077 kb on + strand, within cysK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,313,516 + pdxK OKFHMN_22180 0.66 -2.0 4,313,621 + pdxK OKFHMN_22180 0.79 +0.4 4,313,801 - +1.5 4,313,846 + +1.4 4,313,953 - crr OKFHMN_22185 0.21 -1.3 4,314,365 + -3.5 4,314,366 - -0.1 4,314,659 - ptsI OKFHMN_22190 0.15 +0.3 4,314,703 - ptsI OKFHMN_22190 0.18 -2.1 4,314,747 + ptsI OKFHMN_22190 0.20 -0.9 4,314,747 + ptsI OKFHMN_22190 0.20 -0.5 4,314,748 - ptsI OKFHMN_22190 0.20 -1.1 4,314,748 - ptsI OKFHMN_22190 0.20 +2.0 4,314,897 + ptsI OKFHMN_22190 0.29 -2.4 4,314,958 + ptsI OKFHMN_22190 0.33 -0.9 4,315,092 + ptsI OKFHMN_22190 0.40 -2.2 4,315,092 + ptsI OKFHMN_22190 0.40 -1.9 4,315,093 - ptsI OKFHMN_22190 0.40 +0.1 4,315,239 + ptsI OKFHMN_22190 0.49 -0.3 4,315,310 + ptsI OKFHMN_22190 0.53 -1.5 4,315,311 - ptsI OKFHMN_22190 0.53 -2.9 4,315,311 - ptsI OKFHMN_22190 0.53 -1.3 4,315,339 + ptsI OKFHMN_22190 0.55 -0.7 4,315,473 + ptsI OKFHMN_22190 0.62 -0.9 4,315,891 + ptsI OKFHMN_22190 0.87 +1.3 4,315,892 - ptsI OKFHMN_22190 0.87 -3.0 4,315,895 - ptsI OKFHMN_22190 0.87 -1.3 4,316,134 - +1.7 4,316,134 - +1.9 4,316,326 - ptsH OKFHMN_22195 0.62 -0.8 4,316,347 - ptsH OKFHMN_22195 0.70 -0.4 4,316,442 + +1.0 4,316,496 - +0.5 4,316,496 - +0.1 4,316,542 + +0.5 4,316,597 + +0.3 4,316,598 - -1.4 4,316,666 - +0.5 4,316,683 + -0.7 4,317,077 + cysK OKFHMN_22200 0.28 -2.5
Or see this region's nucleotide sequence