Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pta and eutM overlap by 4 nucleotides eutM and eutN are separated by 106 nucleotides eutN and eutE are separated by 11 nucleotides eutE and eutJ are separated by 10 nucleotides eutJ and eutG overlap by 11 nucleotides
OKFHMN_22030: pta - phosphate acetyltransferase, at 4,284,878 to 4,285,894
pta
OKFHMN_22035: eutM - ethanolamine utilization microcompartment protein EutM, at 4,285,891 to 4,286,226
eutM
OKFHMN_22040: eutN - ethanolamine utilization microcompartment protein EutN, at 4,286,333 to 4,286,620
eutN
OKFHMN_22045: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 4,286,632 to 4,288,035
eutE
OKFHMN_22050: eutJ - ethanolamine utilization protein EutJ, at 4,288,046 to 4,288,882
eutJ
OKFHMN_22055: eutG - ethanolamine utilization ethanol dehydrogenase EutG, at 4,288,872 to 4,290,059
eutG
Position (kb) 4286
4287
4288
4289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4285.755 kb on + strand, within pta at 4285.756 kb on - strand, within pta at 4285.798 kb on + strand at 4285.799 kb on - strand at 4286.056 kb on - strand, within eutM at 4286.147 kb on + strand, within eutM at 4286.147 kb on + strand, within eutM at 4286.148 kb on - strand, within eutM at 4286.224 kb on + strand at 4286.374 kb on - strand, within eutN at 4286.470 kb on + strand, within eutN at 4286.618 kb on + strand at 4286.646 kb on + strand at 4286.805 kb on - strand, within eutE at 4287.056 kb on + strand, within eutE at 4287.057 kb on - strand, within eutE at 4287.057 kb on - strand, within eutE at 4287.057 kb on - strand, within eutE at 4287.060 kb on + strand, within eutE at 4287.061 kb on - strand, within eutE at 4287.061 kb on - strand, within eutE at 4287.195 kb on - strand, within eutE at 4287.201 kb on + strand, within eutE at 4287.202 kb on - strand, within eutE at 4287.293 kb on + strand, within eutE at 4287.649 kb on - strand, within eutE at 4287.862 kb on - strand, within eutE at 4288.007 kb on + strand at 4288.008 kb on - strand at 4288.354 kb on + strand, within eutJ at 4288.354 kb on + strand, within eutJ at 4288.468 kb on - strand, within eutJ at 4288.527 kb on - strand, within eutJ at 4288.588 kb on + strand, within eutJ at 4288.645 kb on + strand, within eutJ at 4288.645 kb on + strand, within eutJ at 4288.694 kb on - strand, within eutJ at 4288.742 kb on - strand, within eutJ at 4288.800 kb on + strand at 4288.869 kb on + strand at 4288.869 kb on + strand at 4288.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,285,755 + pta OKFHMN_22030 0.86 +0.4 4,285,756 - pta OKFHMN_22030 0.86 +0.2 4,285,798 + -0.9 4,285,799 - -0.1 4,286,056 - eutM OKFHMN_22035 0.49 +0.2 4,286,147 + eutM OKFHMN_22035 0.76 +0.2 4,286,147 + eutM OKFHMN_22035 0.76 +0.2 4,286,148 - eutM OKFHMN_22035 0.76 +0.7 4,286,224 + -0.6 4,286,374 - eutN OKFHMN_22040 0.14 -0.4 4,286,470 + eutN OKFHMN_22040 0.48 +0.2 4,286,618 + -0.9 4,286,646 + -0.9 4,286,805 - eutE OKFHMN_22045 0.12 +0.3 4,287,056 + eutE OKFHMN_22045 0.30 +0.8 4,287,057 - eutE OKFHMN_22045 0.30 +0.9 4,287,057 - eutE OKFHMN_22045 0.30 +0.8 4,287,057 - eutE OKFHMN_22045 0.30 -1.9 4,287,060 + eutE OKFHMN_22045 0.30 -0.3 4,287,061 - eutE OKFHMN_22045 0.31 +0.9 4,287,061 - eutE OKFHMN_22045 0.31 -0.6 4,287,195 - eutE OKFHMN_22045 0.40 +0.2 4,287,201 + eutE OKFHMN_22045 0.41 -0.5 4,287,202 - eutE OKFHMN_22045 0.41 -0.5 4,287,293 + eutE OKFHMN_22045 0.47 +0.3 4,287,649 - eutE OKFHMN_22045 0.72 +0.3 4,287,862 - eutE OKFHMN_22045 0.88 -1.7 4,288,007 + +0.4 4,288,008 - +0.0 4,288,354 + eutJ OKFHMN_22050 0.37 +0.7 4,288,354 + eutJ OKFHMN_22050 0.37 +1.0 4,288,468 - eutJ OKFHMN_22050 0.50 -0.1 4,288,527 - eutJ OKFHMN_22050 0.57 +0.0 4,288,588 + eutJ OKFHMN_22050 0.65 +0.4 4,288,645 + eutJ OKFHMN_22050 0.72 -0.3 4,288,645 + eutJ OKFHMN_22050 0.72 -0.1 4,288,694 - eutJ OKFHMN_22050 0.77 -0.9 4,288,742 - eutJ OKFHMN_22050 0.83 -0.2 4,288,800 + +0.4 4,288,869 + +0.4 4,288,869 + +1.8 4,288,869 + -0.0
Or see this region's nucleotide sequence