Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22035

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpta and eutM overlap by 4 nucleotideseutM and eutN are separated by 106 nucleotideseutN and eutE are separated by 11 nucleotides OKFHMN_22030: pta - phosphate acetyltransferase, at 4,284,878 to 4,285,894 pta OKFHMN_22035: eutM - ethanolamine utilization microcompartment protein EutM, at 4,285,891 to 4,286,226 eutM OKFHMN_22040: eutN - ethanolamine utilization microcompartment protein EutN, at 4,286,333 to 4,286,620 eutN OKFHMN_22045: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 4,286,632 to 4,288,035 eutE Position (kb) 4285 4286 4287Strain fitness (log2 ratio) -2 -1 0 1at 4284.945 kb on + strandat 4285.072 kb on - strand, within ptaat 4285.309 kb on + strand, within ptaat 4285.386 kb on + strand, within ptaat 4285.576 kb on - strand, within ptaat 4285.755 kb on + strand, within ptaat 4285.756 kb on - strand, within ptaat 4285.798 kb on + strandat 4285.799 kb on - strandat 4286.056 kb on - strand, within eutMat 4286.147 kb on + strand, within eutMat 4286.147 kb on + strand, within eutMat 4286.148 kb on - strand, within eutMat 4286.224 kb on + strandat 4286.374 kb on - strand, within eutNat 4286.470 kb on + strand, within eutNat 4286.618 kb on + strandat 4286.646 kb on + strandat 4286.805 kb on - strand, within eutEat 4287.056 kb on + strand, within eutEat 4287.057 kb on - strand, within eutEat 4287.057 kb on - strand, within eutEat 4287.057 kb on - strand, within eutEat 4287.060 kb on + strand, within eutEat 4287.061 kb on - strand, within eutEat 4287.061 kb on - strand, within eutEat 4287.195 kb on - strand, within eutEat 4287.201 kb on + strand, within eutEat 4287.202 kb on - strand, within eutE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,284,945 + -0.4
4,285,072 - pta OKFHMN_22030 0.19 -0.2
4,285,309 + pta OKFHMN_22030 0.42 +1.7
4,285,386 + pta OKFHMN_22030 0.50 +0.1
4,285,576 - pta OKFHMN_22030 0.69 +1.1
4,285,755 + pta OKFHMN_22030 0.86 +0.4
4,285,756 - pta OKFHMN_22030 0.86 +0.2
4,285,798 + -0.9
4,285,799 - -0.1
4,286,056 - eutM OKFHMN_22035 0.49 +0.2
4,286,147 + eutM OKFHMN_22035 0.76 +0.2
4,286,147 + eutM OKFHMN_22035 0.76 +0.2
4,286,148 - eutM OKFHMN_22035 0.76 +0.7
4,286,224 + -0.6
4,286,374 - eutN OKFHMN_22040 0.14 -0.4
4,286,470 + eutN OKFHMN_22040 0.48 +0.2
4,286,618 + -0.9
4,286,646 + -0.9
4,286,805 - eutE OKFHMN_22045 0.12 +0.3
4,287,056 + eutE OKFHMN_22045 0.30 +0.8
4,287,057 - eutE OKFHMN_22045 0.30 +0.9
4,287,057 - eutE OKFHMN_22045 0.30 +0.8
4,287,057 - eutE OKFHMN_22045 0.30 -1.9
4,287,060 + eutE OKFHMN_22045 0.30 -0.3
4,287,061 - eutE OKFHMN_22045 0.31 +0.9
4,287,061 - eutE OKFHMN_22045 0.31 -0.6
4,287,195 - eutE OKFHMN_22045 0.40 +0.2
4,287,201 + eutE OKFHMN_22045 0.41 -0.5
4,287,202 - eutE OKFHMN_22045 0.41 -0.5

Or see this region's nucleotide sequence