Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppk1 and purN are separated by 170 nucleotides purN and purM overlap by 1 nucleotides purM and upp are separated by 324 nucleotides
OKFHMN_21800: ppk1 - polyphosphate kinase 1, at 4,233,327 to 4,235,393
ppk1
OKFHMN_21805: purN - phosphoribosylglycinamide formyltransferase, at 4,235,564 to 4,236,202
purN
OKFHMN_21810: purM - Phosphoribosylformylglycinamidine cyclo-ligase, at 4,236,202 to 4,237,239
purM
OKFHMN_21815: upp - uracil phosphoribosyltransferase, at 4,237,564 to 4,238,190
upp
Position (kb) 4236
4237
4238 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4235.207 kb on + strand at 4235.208 kb on - strand at 4235.244 kb on - strand at 4235.245 kb on + strand at 4235.269 kb on + strand at 4235.269 kb on + strand at 4235.270 kb on - strand at 4235.435 kb on + strand at 4235.451 kb on - strand at 4235.469 kb on - strand at 4235.555 kb on + strand at 4235.556 kb on - strand at 4235.566 kb on - strand at 4235.581 kb on - strand at 4235.735 kb on + strand, within purN at 4235.804 kb on - strand, within purN at 4235.849 kb on + strand, within purN at 4235.849 kb on + strand, within purN at 4235.850 kb on - strand, within purN at 4235.970 kb on + strand, within purN at 4235.971 kb on - strand, within purN at 4235.971 kb on - strand, within purN at 4235.971 kb on - strand, within purN at 4235.971 kb on - strand, within purN at 4236.040 kb on + strand, within purN at 4236.041 kb on - strand, within purN at 4236.167 kb on - strand at 4236.184 kb on + strand at 4236.184 kb on + strand at 4236.185 kb on - strand at 4236.203 kb on + strand at 4236.450 kb on + strand, within purM at 4236.513 kb on + strand, within purM at 4236.555 kb on - strand, within purM at 4236.595 kb on - strand, within purM at 4236.660 kb on - strand, within purM at 4236.721 kb on - strand, within purM at 4236.780 kb on - strand, within purM at 4236.794 kb on + strand, within purM at 4236.794 kb on + strand, within purM at 4236.794 kb on + strand, within purM at 4236.794 kb on + strand, within purM at 4236.795 kb on - strand, within purM at 4236.795 kb on - strand, within purM at 4236.795 kb on - strand, within purM at 4236.795 kb on - strand, within purM at 4236.963 kb on + strand, within purM at 4237.009 kb on + strand, within purM at 4237.010 kb on - strand, within purM at 4237.040 kb on - strand, within purM at 4237.040 kb on - strand, within purM at 4237.154 kb on - strand at 4237.218 kb on + strand at 4237.219 kb on - strand at 4237.295 kb on - strand at 4237.516 kb on + strand at 4237.516 kb on + strand at 4237.563 kb on + strand at 4237.629 kb on + strand, within upp at 4237.685 kb on - strand, within upp at 4237.718 kb on + strand, within upp at 4237.768 kb on - strand, within upp at 4237.776 kb on + strand, within upp at 4237.863 kb on + strand, within upp at 4237.867 kb on + strand, within upp at 4237.868 kb on - strand, within upp at 4237.873 kb on - strand, within upp at 4238.042 kb on + strand, within upp at 4238.098 kb on + strand, within upp at 4238.142 kb on + strand at 4238.143 kb on - strand at 4238.188 kb on + strand at 4238.195 kb on + strand at 4238.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,235,207 + -1.0 4,235,208 - -3.1 4,235,244 - -1.9 4,235,245 + -3.5 4,235,269 + -2.4 4,235,269 + -1.2 4,235,270 - -4.0 4,235,435 + +1.2 4,235,451 - +0.6 4,235,469 - +0.3 4,235,555 + +0.6 4,235,556 - -0.1 4,235,566 - -0.0 4,235,581 - +1.7 4,235,735 + purN OKFHMN_21805 0.27 -0.5 4,235,804 - purN OKFHMN_21805 0.38 -2.8 4,235,849 + purN OKFHMN_21805 0.45 -0.9 4,235,849 + purN OKFHMN_21805 0.45 +0.2 4,235,850 - purN OKFHMN_21805 0.45 -2.4 4,235,970 + purN OKFHMN_21805 0.64 -0.6 4,235,971 - purN OKFHMN_21805 0.64 -1.3 4,235,971 - purN OKFHMN_21805 0.64 -2.0 4,235,971 - purN OKFHMN_21805 0.64 -0.7 4,235,971 - purN OKFHMN_21805 0.64 -0.6 4,236,040 + purN OKFHMN_21805 0.74 -0.7 4,236,041 - purN OKFHMN_21805 0.75 -3.2 4,236,167 - -0.5 4,236,184 + -1.0 4,236,184 + -0.4 4,236,185 - -0.3 4,236,203 + -0.0 4,236,450 + purM OKFHMN_21810 0.24 -4.8 4,236,513 + purM OKFHMN_21810 0.30 -3.4 4,236,555 - purM OKFHMN_21810 0.34 -5.4 4,236,595 - purM OKFHMN_21810 0.38 -5.4 4,236,660 - purM OKFHMN_21810 0.44 -2.3 4,236,721 - purM OKFHMN_21810 0.50 -4.4 4,236,780 - purM OKFHMN_21810 0.56 -3.0 4,236,794 + purM OKFHMN_21810 0.57 -3.6 4,236,794 + purM OKFHMN_21810 0.57 -5.4 4,236,794 + purM OKFHMN_21810 0.57 -5.8 4,236,794 + purM OKFHMN_21810 0.57 -4.5 4,236,795 - purM OKFHMN_21810 0.57 -3.8 4,236,795 - purM OKFHMN_21810 0.57 -4.7 4,236,795 - purM OKFHMN_21810 0.57 -4.3 4,236,795 - purM OKFHMN_21810 0.57 -4.6 4,236,963 + purM OKFHMN_21810 0.73 -4.7 4,237,009 + purM OKFHMN_21810 0.78 -5.2 4,237,010 - purM OKFHMN_21810 0.78 -4.4 4,237,040 - purM OKFHMN_21810 0.81 -0.4 4,237,040 - purM OKFHMN_21810 0.81 -6.2 4,237,154 - -5.4 4,237,218 + -5.1 4,237,219 - -2.9 4,237,295 - -1.5 4,237,516 + +0.0 4,237,516 + -0.1 4,237,563 + +0.7 4,237,629 + upp OKFHMN_21815 0.10 +0.1 4,237,685 - upp OKFHMN_21815 0.19 -0.1 4,237,718 + upp OKFHMN_21815 0.25 +0.1 4,237,768 - upp OKFHMN_21815 0.33 -0.9 4,237,776 + upp OKFHMN_21815 0.34 +0.5 4,237,863 + upp OKFHMN_21815 0.48 -0.4 4,237,867 + upp OKFHMN_21815 0.48 +0.5 4,237,868 - upp OKFHMN_21815 0.48 -1.4 4,237,873 - upp OKFHMN_21815 0.49 -1.7 4,238,042 + upp OKFHMN_21815 0.76 +0.3 4,238,098 + upp OKFHMN_21815 0.85 -2.4 4,238,142 + +0.2 4,238,143 - -0.6 4,238,188 + +0.4 4,238,195 + +0.0 4,238,196 - +0.7
Or see this region's nucleotide sequence