Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sseA and yfhM are separated by 206 nucleotides yfhM and pbpC are separated by 0 nucleotides
OKFHMN_21670: sseA - 3-mercaptopyruvate sulfurtransferase, at 4,200,268 to 4,201,113
sseA
OKFHMN_21675: yfhM - alpha2-macroglobulin, at 4,201,320 to 4,206,281
yfhM
OKFHMN_21680: pbpC - peptidoglycan glycosyltransferase PbpC, at 4,206,282 to 4,208,594
pbpC
Position (kb) 4201
4202
4203
4204
4205
4206
4207 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4200.330 kb on - strand at 4200.389 kb on - strand, within sseA at 4200.528 kb on + strand, within sseA at 4200.716 kb on - strand, within sseA at 4200.716 kb on - strand, within sseA at 4200.853 kb on - strand, within sseA at 4200.976 kb on - strand, within sseA at 4200.976 kb on - strand, within sseA at 4200.989 kb on + strand, within sseA at 4201.006 kb on - strand, within sseA at 4201.068 kb on + strand at 4201.068 kb on + strand at 4201.068 kb on + strand at 4201.069 kb on - strand at 4201.113 kb on + strand at 4201.113 kb on + strand at 4201.143 kb on + strand at 4201.143 kb on + strand at 4201.231 kb on - strand at 4201.249 kb on + strand at 4201.249 kb on + strand at 4201.250 kb on - strand at 4201.258 kb on + strand at 4201.272 kb on + strand at 4201.336 kb on + strand at 4201.352 kb on - strand at 4201.352 kb on - strand at 4201.385 kb on + strand at 4201.430 kb on + strand at 4201.669 kb on + strand at 4201.676 kb on + strand at 4201.730 kb on + strand at 4201.796 kb on - strand at 4201.898 kb on + strand, within yfhM at 4201.898 kb on + strand, within yfhM at 4201.899 kb on - strand, within yfhM at 4202.162 kb on + strand, within yfhM at 4202.185 kb on + strand, within yfhM at 4202.186 kb on - strand, within yfhM at 4202.186 kb on - strand, within yfhM at 4202.375 kb on - strand, within yfhM at 4202.387 kb on + strand, within yfhM at 4202.388 kb on - strand, within yfhM at 4202.471 kb on + strand, within yfhM at 4202.471 kb on + strand, within yfhM at 4202.591 kb on - strand, within yfhM at 4202.591 kb on - strand, within yfhM at 4202.600 kb on + strand, within yfhM at 4202.663 kb on + strand, within yfhM at 4202.663 kb on + strand, within yfhM at 4202.664 kb on - strand, within yfhM at 4202.697 kb on - strand, within yfhM at 4202.853 kb on + strand, within yfhM at 4202.853 kb on + strand, within yfhM at 4202.957 kb on + strand, within yfhM at 4202.959 kb on + strand, within yfhM at 4202.959 kb on + strand, within yfhM at 4202.959 kb on + strand, within yfhM at 4202.960 kb on - strand, within yfhM at 4202.960 kb on - strand, within yfhM at 4202.960 kb on - strand, within yfhM at 4203.199 kb on - strand, within yfhM at 4203.273 kb on + strand, within yfhM at 4203.274 kb on - strand, within yfhM at 4203.275 kb on + strand, within yfhM at 4203.346 kb on - strand, within yfhM at 4203.481 kb on - strand, within yfhM at 4203.518 kb on + strand, within yfhM at 4203.540 kb on + strand, within yfhM at 4203.554 kb on + strand, within yfhM at 4203.557 kb on + strand, within yfhM at 4203.558 kb on - strand, within yfhM at 4203.558 kb on - strand, within yfhM at 4203.638 kb on + strand, within yfhM at 4203.638 kb on + strand, within yfhM at 4203.790 kb on - strand, within yfhM at 4203.797 kb on + strand, within yfhM at 4204.020 kb on - strand, within yfhM at 4204.020 kb on - strand, within yfhM at 4204.045 kb on - strand, within yfhM at 4204.113 kb on + strand, within yfhM at 4204.113 kb on + strand, within yfhM at 4204.218 kb on - strand, within yfhM at 4204.366 kb on + strand, within yfhM at 4204.560 kb on - strand, within yfhM at 4204.562 kb on + strand, within yfhM at 4204.562 kb on + strand, within yfhM at 4204.562 kb on + strand, within yfhM at 4204.563 kb on - strand, within yfhM at 4204.563 kb on - strand, within yfhM at 4204.563 kb on - strand, within yfhM at 4204.719 kb on + strand, within yfhM at 4204.846 kb on - strand, within yfhM at 4204.918 kb on - strand, within yfhM at 4204.920 kb on - strand, within yfhM at 4204.920 kb on - strand, within yfhM at 4205.070 kb on + strand, within yfhM at 4205.251 kb on - strand, within yfhM at 4205.436 kb on - strand, within yfhM at 4205.648 kb on + strand, within yfhM at 4205.868 kb on - strand at 4205.894 kb on + strand at 4205.927 kb on - strand at 4206.055 kb on + strand at 4206.055 kb on + strand at 4206.083 kb on + strand at 4206.083 kb on + strand at 4206.159 kb on + strand at 4206.160 kb on - strand at 4206.189 kb on + strand at 4206.222 kb on + strand at 4206.222 kb on + strand at 4206.222 kb on + strand at 4206.223 kb on - strand at 4206.280 kb on - strand at 4206.507 kb on + strand at 4206.641 kb on + strand, within pbpC at 4206.849 kb on + strand, within pbpC at 4206.941 kb on + strand, within pbpC at 4207.104 kb on - strand, within pbpC at 4207.104 kb on - strand, within pbpC at 4207.205 kb on + strand, within pbpC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,200,330 - +0.3 4,200,389 - sseA OKFHMN_21670 0.14 -0.7 4,200,528 + sseA OKFHMN_21670 0.31 +0.4 4,200,716 - sseA OKFHMN_21670 0.53 +0.2 4,200,716 - sseA OKFHMN_21670 0.53 +0.1 4,200,853 - sseA OKFHMN_21670 0.69 +1.2 4,200,976 - sseA OKFHMN_21670 0.84 -0.1 4,200,976 - sseA OKFHMN_21670 0.84 -2.6 4,200,989 + sseA OKFHMN_21670 0.85 +1.3 4,201,006 - sseA OKFHMN_21670 0.87 +0.7 4,201,068 + -0.0 4,201,068 + -0.9 4,201,068 + +0.6 4,201,069 - +0.9 4,201,113 + -2.1 4,201,113 + +0.7 4,201,143 + -0.0 4,201,143 + -0.9 4,201,231 - +1.1 4,201,249 + +1.7 4,201,249 + +1.0 4,201,250 - +1.0 4,201,258 + +1.0 4,201,272 + +1.4 4,201,336 + -0.4 4,201,352 - -0.8 4,201,352 - -1.5 4,201,385 + -0.3 4,201,430 + +0.2 4,201,669 + +0.3 4,201,676 + +0.1 4,201,730 + -0.6 4,201,796 - +0.7 4,201,898 + yfhM OKFHMN_21675 0.12 -0.2 4,201,898 + yfhM OKFHMN_21675 0.12 +0.4 4,201,899 - yfhM OKFHMN_21675 0.12 +0.2 4,202,162 + yfhM OKFHMN_21675 0.17 -0.5 4,202,185 + yfhM OKFHMN_21675 0.17 +0.4 4,202,186 - yfhM OKFHMN_21675 0.17 +2.3 4,202,186 - yfhM OKFHMN_21675 0.17 -0.1 4,202,375 - yfhM OKFHMN_21675 0.21 -0.1 4,202,387 + yfhM OKFHMN_21675 0.22 +0.0 4,202,388 - yfhM OKFHMN_21675 0.22 +1.1 4,202,471 + yfhM OKFHMN_21675 0.23 +1.1 4,202,471 + yfhM OKFHMN_21675 0.23 -2.0 4,202,591 - yfhM OKFHMN_21675 0.26 +0.1 4,202,591 - yfhM OKFHMN_21675 0.26 +0.1 4,202,600 + yfhM OKFHMN_21675 0.26 -2.0 4,202,663 + yfhM OKFHMN_21675 0.27 +1.5 4,202,663 + yfhM OKFHMN_21675 0.27 +0.2 4,202,664 - yfhM OKFHMN_21675 0.27 +0.5 4,202,697 - yfhM OKFHMN_21675 0.28 +0.4 4,202,853 + yfhM OKFHMN_21675 0.31 -0.4 4,202,853 + yfhM OKFHMN_21675 0.31 +1.9 4,202,957 + yfhM OKFHMN_21675 0.33 +0.6 4,202,959 + yfhM OKFHMN_21675 0.33 -1.7 4,202,959 + yfhM OKFHMN_21675 0.33 +0.7 4,202,959 + yfhM OKFHMN_21675 0.33 -2.2 4,202,960 - yfhM OKFHMN_21675 0.33 +0.9 4,202,960 - yfhM OKFHMN_21675 0.33 -0.2 4,202,960 - yfhM OKFHMN_21675 0.33 +0.5 4,203,199 - yfhM OKFHMN_21675 0.38 +0.2 4,203,273 + yfhM OKFHMN_21675 0.39 +0.2 4,203,274 - yfhM OKFHMN_21675 0.39 -0.3 4,203,275 + yfhM OKFHMN_21675 0.39 +0.3 4,203,346 - yfhM OKFHMN_21675 0.41 -0.6 4,203,481 - yfhM OKFHMN_21675 0.44 +0.2 4,203,518 + yfhM OKFHMN_21675 0.44 +0.1 4,203,540 + yfhM OKFHMN_21675 0.45 +0.5 4,203,554 + yfhM OKFHMN_21675 0.45 -0.2 4,203,557 + yfhM OKFHMN_21675 0.45 +0.9 4,203,558 - yfhM OKFHMN_21675 0.45 -1.5 4,203,558 - yfhM OKFHMN_21675 0.45 +0.9 4,203,638 + yfhM OKFHMN_21675 0.47 -0.3 4,203,638 + yfhM OKFHMN_21675 0.47 +0.5 4,203,790 - yfhM OKFHMN_21675 0.50 +0.3 4,203,797 + yfhM OKFHMN_21675 0.50 +0.3 4,204,020 - yfhM OKFHMN_21675 0.54 -0.4 4,204,020 - yfhM OKFHMN_21675 0.54 -0.0 4,204,045 - yfhM OKFHMN_21675 0.55 +1.6 4,204,113 + yfhM OKFHMN_21675 0.56 -0.2 4,204,113 + yfhM OKFHMN_21675 0.56 +0.6 4,204,218 - yfhM OKFHMN_21675 0.58 -1.4 4,204,366 + yfhM OKFHMN_21675 0.61 +0.5 4,204,560 - yfhM OKFHMN_21675 0.65 -1.8 4,204,562 + yfhM OKFHMN_21675 0.65 -0.7 4,204,562 + yfhM OKFHMN_21675 0.65 +0.1 4,204,562 + yfhM OKFHMN_21675 0.65 +0.0 4,204,563 - yfhM OKFHMN_21675 0.65 -2.7 4,204,563 - yfhM OKFHMN_21675 0.65 +0.5 4,204,563 - yfhM OKFHMN_21675 0.65 -0.1 4,204,719 + yfhM OKFHMN_21675 0.69 +0.4 4,204,846 - yfhM OKFHMN_21675 0.71 +0.3 4,204,918 - yfhM OKFHMN_21675 0.73 -1.3 4,204,920 - yfhM OKFHMN_21675 0.73 +0.0 4,204,920 - yfhM OKFHMN_21675 0.73 +0.5 4,205,070 + yfhM OKFHMN_21675 0.76 -0.0 4,205,251 - yfhM OKFHMN_21675 0.79 -0.4 4,205,436 - yfhM OKFHMN_21675 0.83 +0.1 4,205,648 + yfhM OKFHMN_21675 0.87 -0.5 4,205,868 - +0.3 4,205,894 + +1.1 4,205,927 - +1.5 4,206,055 + +0.4 4,206,055 + -0.4 4,206,083 + -1.6 4,206,083 + -0.2 4,206,159 + -2.8 4,206,160 - -0.6 4,206,189 + -0.4 4,206,222 + -1.5 4,206,222 + -0.5 4,206,222 + -0.0 4,206,223 - -0.1 4,206,280 - -0.9 4,206,507 + -0.2 4,206,641 + pbpC OKFHMN_21680 0.16 +0.2 4,206,849 + pbpC OKFHMN_21680 0.25 -0.5 4,206,941 + pbpC OKFHMN_21680 0.28 -0.5 4,207,104 - pbpC OKFHMN_21680 0.36 +0.7 4,207,104 - pbpC OKFHMN_21680 0.36 +0.9 4,207,205 + pbpC OKFHMN_21680 0.40 -0.8
Or see this region's nucleotide sequence