Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hscA and fdx are separated by 1 nucleotides fdx and iscX are separated by 11 nucleotides iscX and pepB are separated by 177 nucleotides pepB and sseB are separated by 142 nucleotides
OKFHMN_21640: hscA - Fe-S protein assembly chaperone HscA, at 4,194,989 to 4,196,839
hscA
OKFHMN_21645: fdx - ISC system 2Fe-2S type ferredoxin, at 4,196,841 to 4,197,176
fdx
OKFHMN_21650: iscX - Fe-S cluster assembly protein IscX, at 4,197,188 to 4,197,388
iscX
OKFHMN_21655: pepB - aminopeptidase PepB, at 4,197,566 to 4,198,849
pepB
OKFHMN_21660: sseB - enhanced serine sensitivity protein SseB, at 4,198,992 to 4,199,768
sseB
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4197.188 kb on - strand at 4197.196 kb on + strand at 4197.280 kb on + strand, within iscX at 4197.448 kb on + strand at 4197.449 kb on - strand at 4197.449 kb on - strand at 4197.452 kb on + strand at 4197.452 kb on + strand at 4197.452 kb on + strand at 4197.453 kb on - strand at 4197.453 kb on - strand at 4197.453 kb on - strand at 4197.456 kb on + strand at 4197.456 kb on + strand at 4197.456 kb on + strand at 4197.457 kb on - strand at 4197.457 kb on - strand at 4197.547 kb on - strand at 4197.562 kb on + strand at 4197.563 kb on - strand at 4197.563 kb on - strand at 4197.595 kb on + strand at 4197.635 kb on + strand at 4197.797 kb on + strand, within pepB at 4197.797 kb on + strand, within pepB at 4198.034 kb on + strand, within pepB at 4198.034 kb on + strand, within pepB at 4198.035 kb on - strand, within pepB at 4198.035 kb on - strand, within pepB at 4198.035 kb on - strand, within pepB at 4198.035 kb on - strand, within pepB at 4198.036 kb on + strand, within pepB at 4198.147 kb on + strand, within pepB at 4198.147 kb on + strand, within pepB at 4198.515 kb on - strand, within pepB at 4198.727 kb on + strand at 4198.727 kb on + strand at 4198.804 kb on + strand at 4198.805 kb on - strand at 4198.852 kb on + strand at 4198.852 kb on + strand at 4198.853 kb on - strand at 4198.871 kb on + strand at 4198.928 kb on + strand at 4198.928 kb on + strand at 4199.077 kb on + strand, within sseB at 4199.077 kb on + strand, within sseB at 4199.138 kb on + strand, within sseB at 4199.152 kb on + strand, within sseB at 4199.333 kb on + strand, within sseB at 4199.508 kb on - strand, within sseB at 4199.520 kb on - strand, within sseB at 4199.543 kb on + strand, within sseB at 4199.543 kb on + strand, within sseB at 4199.646 kb on - strand, within sseB at 4199.687 kb on + strand, within sseB at 4199.713 kb on - strand at 4199.713 kb on - strand at 4199.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,197,188 - +0.6 4,197,196 + -1.3 4,197,280 + iscX OKFHMN_21650 0.46 -0.6 4,197,448 + +0.4 4,197,449 - +0.2 4,197,449 - +0.6 4,197,452 + +0.1 4,197,452 + -0.2 4,197,452 + +0.0 4,197,453 - +2.1 4,197,453 - -0.7 4,197,453 - +0.4 4,197,456 + +0.9 4,197,456 + -2.2 4,197,456 + -0.7 4,197,457 - +0.8 4,197,457 - +0.5 4,197,547 - -0.5 4,197,562 + -0.2 4,197,563 - -1.5 4,197,563 - +0.3 4,197,595 + +0.5 4,197,635 + +0.3 4,197,797 + pepB OKFHMN_21655 0.18 -0.3 4,197,797 + pepB OKFHMN_21655 0.18 +0.3 4,198,034 + pepB OKFHMN_21655 0.36 -1.2 4,198,034 + pepB OKFHMN_21655 0.36 +0.3 4,198,035 - pepB OKFHMN_21655 0.37 -2.1 4,198,035 - pepB OKFHMN_21655 0.37 +0.5 4,198,035 - pepB OKFHMN_21655 0.37 +0.6 4,198,035 - pepB OKFHMN_21655 0.37 +1.3 4,198,036 + pepB OKFHMN_21655 0.37 +0.1 4,198,147 + pepB OKFHMN_21655 0.45 +0.1 4,198,147 + pepB OKFHMN_21655 0.45 +0.1 4,198,515 - pepB OKFHMN_21655 0.74 -0.1 4,198,727 + +0.3 4,198,727 + +0.4 4,198,804 + -1.5 4,198,805 - -0.1 4,198,852 + +0.9 4,198,852 + +0.3 4,198,853 - -0.1 4,198,871 + -0.2 4,198,928 + +0.2 4,198,928 + -2.2 4,199,077 + sseB OKFHMN_21660 0.11 -0.1 4,199,077 + sseB OKFHMN_21660 0.11 +0.5 4,199,138 + sseB OKFHMN_21660 0.19 -0.5 4,199,152 + sseB OKFHMN_21660 0.21 -0.6 4,199,333 + sseB OKFHMN_21660 0.44 -1.5 4,199,508 - sseB OKFHMN_21660 0.66 -0.4 4,199,520 - sseB OKFHMN_21660 0.68 +0.1 4,199,543 + sseB OKFHMN_21660 0.71 +0.3 4,199,543 + sseB OKFHMN_21660 0.71 +0.0 4,199,646 - sseB OKFHMN_21660 0.84 +0.3 4,199,687 + sseB OKFHMN_21660 0.89 +0.6 4,199,713 - +0.5 4,199,713 - -0.5 4,199,748 - +0.6
Or see this region's nucleotide sequence