Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srlD and srlB are separated by 3 nucleotides srlB and OKFHMN_20680 are separated by 10 nucleotides OKFHMN_20680 and OKFHMN_20685 are separated by 104 nucleotides OKFHMN_20685 and OKFHMN_20690 are separated by 163 nucleotides
OKFHMN_20670: srlD - sorbitol-6-phosphate dehydrogenase, at 4,024,156 to 4,024,935
srlD
OKFHMN_20675: srlB - PTS glucitol/sorbitol transporter subunit IIA, at 4,024,939 to 4,025,310
srlB
OKFHMN_20680: OKFHMN_20680 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components frag, at 4,025,321 to 4,025,971
_20680
OKFHMN_20685: OKFHMN_20685 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components frag, at 4,026,076 to 4,026,282
_20685
OKFHMN_20690: OKFHMN_20690 - Glucitol/sorbitol permease IIC component, at 4,026,446 to 4,026,841
_20690
Position (kb) 4025
4026 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4024.337 kb on + strand, within srlD at 4024.337 kb on + strand, within srlD at 4024.337 kb on + strand, within srlD at 4024.338 kb on - strand, within srlD at 4024.338 kb on - strand, within srlD at 4024.610 kb on - strand, within srlD at 4024.610 kb on - strand, within srlD at 4024.648 kb on - strand, within srlD at 4024.677 kb on - strand, within srlD at 4024.677 kb on - strand, within srlD at 4024.948 kb on - strand at 4025.038 kb on + strand, within srlB at 4025.039 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.301 kb on + strand at 4025.302 kb on - strand at 4025.504 kb on + strand, within OKFHMN_20680 at 4025.708 kb on - strand, within OKFHMN_20680 at 4025.763 kb on - strand, within OKFHMN_20680 at 4025.881 kb on - strand, within OKFHMN_20680 at 4025.958 kb on + strand at 4025.958 kb on + strand at 4025.959 kb on - strand at 4025.959 kb on - strand at 4025.959 kb on - strand at 4026.017 kb on - strand at 4026.118 kb on + strand, within OKFHMN_20685 at 4026.130 kb on + strand, within OKFHMN_20685 at 4026.196 kb on - strand, within OKFHMN_20685 at 4026.198 kb on - strand, within OKFHMN_20685 at 4026.198 kb on - strand, within OKFHMN_20685 at 4026.406 kb on + strand at 4026.406 kb on + strand at 4026.406 kb on + strand at 4026.406 kb on + strand at 4026.528 kb on + strand, within OKFHMN_20690 at 4026.546 kb on + strand, within OKFHMN_20690 at 4026.546 kb on + strand, within OKFHMN_20690 at 4026.635 kb on + strand, within OKFHMN_20690 at 4026.635 kb on + strand, within OKFHMN_20690 at 4026.639 kb on + strand, within OKFHMN_20690 at 4026.686 kb on - strand, within OKFHMN_20690 at 4026.826 kb on + strand at 4026.827 kb on - strand at 4026.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,024,337 + srlD OKFHMN_20670 0.23 -0.8 4,024,337 + srlD OKFHMN_20670 0.23 +0.9 4,024,337 + srlD OKFHMN_20670 0.23 +0.0 4,024,338 - srlD OKFHMN_20670 0.23 -0.8 4,024,338 - srlD OKFHMN_20670 0.23 +0.4 4,024,610 - srlD OKFHMN_20670 0.58 -0.1 4,024,610 - srlD OKFHMN_20670 0.58 +0.1 4,024,648 - srlD OKFHMN_20670 0.63 +0.6 4,024,677 - srlD OKFHMN_20670 0.67 -0.2 4,024,677 - srlD OKFHMN_20670 0.67 +0.8 4,024,948 - -0.4 4,025,038 + srlB OKFHMN_20675 0.27 -0.4 4,025,039 - srlB OKFHMN_20675 0.27 +0.4 4,025,196 - srlB OKFHMN_20675 0.69 +0.6 4,025,196 - srlB OKFHMN_20675 0.69 +1.0 4,025,196 - srlB OKFHMN_20675 0.69 +0.1 4,025,196 - srlB OKFHMN_20675 0.69 -0.4 4,025,301 + +0.2 4,025,302 - +1.4 4,025,504 + OKFHMN_20680 0.28 -1.8 4,025,708 - OKFHMN_20680 0.59 -0.2 4,025,763 - OKFHMN_20680 0.68 +0.4 4,025,881 - OKFHMN_20680 0.86 +0.4 4,025,958 + +0.3 4,025,958 + +0.2 4,025,959 - +2.3 4,025,959 - +1.2 4,025,959 - -0.7 4,026,017 - +0.9 4,026,118 + OKFHMN_20685 0.20 -0.7 4,026,130 + OKFHMN_20685 0.26 -0.8 4,026,196 - OKFHMN_20685 0.58 +0.1 4,026,198 - OKFHMN_20685 0.59 -0.4 4,026,198 - OKFHMN_20685 0.59 -0.3 4,026,406 + -0.8 4,026,406 + -1.2 4,026,406 + +0.6 4,026,406 + -0.4 4,026,528 + OKFHMN_20690 0.21 -0.2 4,026,546 + OKFHMN_20690 0.25 +0.6 4,026,546 + OKFHMN_20690 0.25 -0.5 4,026,635 + OKFHMN_20690 0.48 +0.5 4,026,635 + OKFHMN_20690 0.48 -0.4 4,026,639 + OKFHMN_20690 0.49 +0.9 4,026,686 - OKFHMN_20690 0.61 -0.7 4,026,826 + +0.4 4,026,827 - +0.1 4,026,837 - -0.3
Or see this region's nucleotide sequence