Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srlR and gutM are separated by 66 nucleotides gutM and srlD are separated by 105 nucleotides srlD and srlB are separated by 3 nucleotides srlB and OKFHMN_20680 are separated by 10 nucleotides
OKFHMN_20660: srlR - glucitol operon DNA-binding transcriptional repressor SrlR, at 4,022,851 to 4,023,624
srlR
OKFHMN_20665: gutM - transcriptional regulator GutM, at 4,023,691 to 4,024,050
gutM
OKFHMN_20670: srlD - sorbitol-6-phosphate dehydrogenase, at 4,024,156 to 4,024,935
srlD
OKFHMN_20675: srlB - PTS glucitol/sorbitol transporter subunit IIA, at 4,024,939 to 4,025,310
srlB
OKFHMN_20680: OKFHMN_20680 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components frag, at 4,025,321 to 4,025,971
_20680
Position (kb) 4024
4025 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4023.213 kb on + strand, within srlR at 4023.214 kb on - strand, within srlR at 4023.467 kb on + strand, within srlR at 4023.471 kb on + strand, within srlR at 4023.520 kb on - strand, within srlR at 4023.520 kb on - strand, within srlR at 4023.542 kb on + strand, within srlR at 4023.588 kb on - strand at 4023.634 kb on + strand at 4023.644 kb on - strand at 4023.721 kb on + strand at 4023.841 kb on - strand, within gutM at 4023.949 kb on + strand, within gutM at 4023.950 kb on - strand, within gutM at 4023.950 kb on - strand, within gutM at 4023.970 kb on - strand, within gutM at 4024.051 kb on - strand at 4024.062 kb on - strand at 4024.084 kb on - strand at 4024.098 kb on + strand at 4024.116 kb on - strand at 4024.118 kb on + strand at 4024.206 kb on - strand at 4024.206 kb on - strand at 4024.257 kb on - strand, within srlD at 4024.292 kb on + strand, within srlD at 4024.292 kb on + strand, within srlD at 4024.292 kb on + strand, within srlD at 4024.293 kb on - strand, within srlD at 4024.293 kb on - strand, within srlD at 4024.296 kb on - strand, within srlD at 4024.337 kb on + strand, within srlD at 4024.337 kb on + strand, within srlD at 4024.337 kb on + strand, within srlD at 4024.338 kb on - strand, within srlD at 4024.338 kb on - strand, within srlD at 4024.610 kb on - strand, within srlD at 4024.610 kb on - strand, within srlD at 4024.648 kb on - strand, within srlD at 4024.677 kb on - strand, within srlD at 4024.677 kb on - strand, within srlD at 4024.948 kb on - strand at 4025.038 kb on + strand, within srlB at 4025.039 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.196 kb on - strand, within srlB at 4025.301 kb on + strand at 4025.302 kb on - strand at 4025.504 kb on + strand, within OKFHMN_20680 at 4025.708 kb on - strand, within OKFHMN_20680 at 4025.763 kb on - strand, within OKFHMN_20680 at 4025.881 kb on - strand, within OKFHMN_20680
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,023,213 + srlR OKFHMN_20660 0.47 -0.1 4,023,214 - srlR OKFHMN_20660 0.47 -0.4 4,023,467 + srlR OKFHMN_20660 0.80 +0.1 4,023,471 + srlR OKFHMN_20660 0.80 +0.4 4,023,520 - srlR OKFHMN_20660 0.86 +0.4 4,023,520 - srlR OKFHMN_20660 0.86 -0.5 4,023,542 + srlR OKFHMN_20660 0.89 -0.4 4,023,588 - +0.2 4,023,634 + -2.5 4,023,644 - -0.6 4,023,721 + -0.6 4,023,841 - gutM OKFHMN_20665 0.42 -0.3 4,023,949 + gutM OKFHMN_20665 0.72 +0.3 4,023,950 - gutM OKFHMN_20665 0.72 -2.7 4,023,950 - gutM OKFHMN_20665 0.72 +0.2 4,023,970 - gutM OKFHMN_20665 0.78 -1.3 4,024,051 - +0.3 4,024,062 - +0.3 4,024,084 - +0.2 4,024,098 + -2.6 4,024,116 - +2.0 4,024,118 + -2.7 4,024,206 - -1.0 4,024,206 - -0.8 4,024,257 - srlD OKFHMN_20670 0.13 -0.3 4,024,292 + srlD OKFHMN_20670 0.17 +0.4 4,024,292 + srlD OKFHMN_20670 0.17 -1.0 4,024,292 + srlD OKFHMN_20670 0.17 +0.1 4,024,293 - srlD OKFHMN_20670 0.18 +0.3 4,024,293 - srlD OKFHMN_20670 0.18 -0.1 4,024,296 - srlD OKFHMN_20670 0.18 +0.1 4,024,337 + srlD OKFHMN_20670 0.23 -0.8 4,024,337 + srlD OKFHMN_20670 0.23 +0.9 4,024,337 + srlD OKFHMN_20670 0.23 +0.0 4,024,338 - srlD OKFHMN_20670 0.23 -0.8 4,024,338 - srlD OKFHMN_20670 0.23 +0.4 4,024,610 - srlD OKFHMN_20670 0.58 -0.1 4,024,610 - srlD OKFHMN_20670 0.58 +0.1 4,024,648 - srlD OKFHMN_20670 0.63 +0.6 4,024,677 - srlD OKFHMN_20670 0.67 -0.2 4,024,677 - srlD OKFHMN_20670 0.67 +0.8 4,024,948 - -0.4 4,025,038 + srlB OKFHMN_20675 0.27 -0.4 4,025,039 - srlB OKFHMN_20675 0.27 +0.4 4,025,196 - srlB OKFHMN_20675 0.69 +0.6 4,025,196 - srlB OKFHMN_20675 0.69 +1.0 4,025,196 - srlB OKFHMN_20675 0.69 +0.1 4,025,196 - srlB OKFHMN_20675 0.69 -0.4 4,025,301 + +0.2 4,025,302 - +1.4 4,025,504 + OKFHMN_20680 0.28 -1.8 4,025,708 - OKFHMN_20680 0.59 -0.2 4,025,763 - OKFHMN_20680 0.68 +0.4 4,025,881 - OKFHMN_20680 0.86 +0.4
Or see this region's nucleotide sequence