Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galP and metK are separated by 436 nucleotides metK and speA are separated by 794 nucleotides
OKFHMN_19295: galP - galactose/proton symporter, at 3,745,214 to 3,746,608
galP
OKFHMN_19300: metK - methionine adenosyltransferase, at 3,747,045 to 3,748,199
metK
OKFHMN_19305: speA - biosynthetic arginine decarboxylase, at 3,748,994 to 3,750,970
speA
Position (kb)
3747
3748
3749 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3746.112 kb on + strand, within galP at 3746.136 kb on + strand, within galP at 3746.223 kb on + strand, within galP at 3746.223 kb on + strand, within galP at 3746.223 kb on + strand, within galP at 3746.236 kb on + strand, within galP at 3746.239 kb on - strand, within galP at 3746.253 kb on - strand, within galP at 3746.378 kb on - strand, within galP at 3746.435 kb on + strand, within galP at 3746.436 kb on - strand, within galP at 3746.462 kb on - strand, within galP at 3746.664 kb on + strand at 3746.756 kb on - strand at 3746.763 kb on + strand at 3746.764 kb on - strand at 3746.778 kb on + strand at 3746.935 kb on - strand at 3746.935 kb on - strand at 3746.935 kb on - strand at 3746.993 kb on + strand at 3748.270 kb on - strand at 3748.270 kb on - strand at 3748.449 kb on + strand at 3748.454 kb on - strand at 3748.454 kb on - strand at 3748.485 kb on + strand at 3748.508 kb on + strand at 3748.608 kb on + strand at 3748.697 kb on + strand at 3748.710 kb on + strand at 3748.710 kb on + strand at 3748.712 kb on + strand at 3748.750 kb on - strand at 3748.845 kb on - strand at 3748.917 kb on + strand at 3748.918 kb on - strand at 3748.970 kb on + strand at 3748.973 kb on + strand at 3748.973 kb on + strand at 3748.993 kb on + strand at 3749.049 kb on + strand at 3749.049 kb on + strand at 3749.049 kb on + strand at 3749.104 kb on + strand at 3749.108 kb on + strand at 3749.109 kb on - strand at 3749.109 kb on - strand at 3749.131 kb on + strand at 3749.135 kb on + strand at 3749.135 kb on + strand at 3749.138 kb on + strand at 3749.138 kb on + strand at 3749.138 kb on + strand at 3749.138 kb on + strand at 3749.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,746,112 + galP OKFHMN_19295 0.64 -0.1 3,746,136 + galP OKFHMN_19295 0.66 -0.1 3,746,223 + galP OKFHMN_19295 0.72 -1.3 3,746,223 + galP OKFHMN_19295 0.72 -1.1 3,746,223 + galP OKFHMN_19295 0.72 +0.0 3,746,236 + galP OKFHMN_19295 0.73 -0.0 3,746,239 - galP OKFHMN_19295 0.73 +0.1 3,746,253 - galP OKFHMN_19295 0.74 +0.1 3,746,378 - galP OKFHMN_19295 0.83 +0.3 3,746,435 + galP OKFHMN_19295 0.88 -3.4 3,746,436 - galP OKFHMN_19295 0.88 -1.7 3,746,462 - galP OKFHMN_19295 0.89 -0.3 3,746,664 + +0.2 3,746,756 - +2.2 3,746,763 + +1.4 3,746,764 - +0.2 3,746,778 + -0.0 3,746,935 - +1.3 3,746,935 - +0.2 3,746,935 - -0.7 3,746,993 + +0.5 3,748,270 - -0.6 3,748,270 - -1.9 3,748,449 + -0.9 3,748,454 - +1.7 3,748,454 - +0.3 3,748,485 + +0.5 3,748,508 + -0.2 3,748,608 + -1.1 3,748,697 + -0.9 3,748,710 + -1.2 3,748,710 + +0.5 3,748,712 + +0.0 3,748,750 - +0.2 3,748,845 - -0.7 3,748,917 + +0.1 3,748,918 - +0.8 3,748,970 + -0.2 3,748,973 + +0.0 3,748,973 + +0.7 3,748,993 + +0.6 3,749,049 + +0.1 3,749,049 + +0.6 3,749,049 + -1.0 3,749,104 + +0.5 3,749,108 + -0.7 3,749,109 - -0.4 3,749,109 - +0.8 3,749,131 + -1.9 3,749,135 + -0.4 3,749,135 + +0.7 3,749,138 + +0.5 3,749,138 + -0.1 3,749,138 + +0.0 3,749,138 + -0.1 3,749,138 + -0.3
Or see this region's nucleotide sequence