Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18390

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_18385 and yhaB are separated by 21 nucleotidesyhaB and tdcA are separated by 788 nucleotides OKFHMN_18385: OKFHMN_18385 - YhaC family protein, at 3,567,164 to 3,568,351 _18385 OKFHMN_18390: yhaB - Uncharacterized protein YhaB, at 3,568,373 to 3,568,912 yhaB OKFHMN_18395: tdcA - transcriptional regulator TdcA, at 3,569,701 to 3,570,639 tdcA Position (kb) 3568 3569Strain fitness (log2 ratio) -2 -1 0 1at 3567.879 kb on - strand, within OKFHMN_18385at 3567.894 kb on - strand, within OKFHMN_18385at 3567.998 kb on + strand, within OKFHMN_18385at 3568.031 kb on - strand, within OKFHMN_18385at 3568.196 kb on + strand, within OKFHMN_18385at 3568.526 kb on - strand, within yhaBat 3568.607 kb on + strand, within yhaBat 3568.660 kb on + strand, within yhaBat 3568.734 kb on - strand, within yhaBat 3568.736 kb on + strand, within yhaBat 3568.758 kb on - strand, within yhaBat 3568.946 kb on + strandat 3568.947 kb on - strandat 3569.140 kb on + strandat 3569.550 kb on + strandat 3569.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,567,879 - OKFHMN_18385 0.60 -0.2
3,567,894 - OKFHMN_18385 0.61 +0.6
3,567,998 + OKFHMN_18385 0.70 -0.8
3,568,031 - OKFHMN_18385 0.73 +0.4
3,568,196 + OKFHMN_18385 0.87 +0.8
3,568,526 - yhaB OKFHMN_18390 0.28 +0.0
3,568,607 + yhaB OKFHMN_18390 0.43 -1.8
3,568,660 + yhaB OKFHMN_18390 0.53 +0.3
3,568,734 - yhaB OKFHMN_18390 0.67 +0.3
3,568,736 + yhaB OKFHMN_18390 0.67 -0.4
3,568,758 - yhaB OKFHMN_18390 0.71 -0.2
3,568,946 + -0.5
3,568,947 - +0.6
3,569,140 + -1.3
3,569,550 + +1.4
3,569,758 - -0.2

Or see this region's nucleotide sequence