Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18080

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglmM and secG are separated by 227 nucleotidessecG and Leu_trna are separated by 14 nucleotidesLeu_trna and yhbX are separated by 566 nucleotides OKFHMN_18070: glmM - phosphoglucosamine mutase, at 3,509,828 to 3,511,165 glmM OKFHMN_18075: secG - preprotein translocase subunit SecG, at 3,511,393 to 3,511,725 secG OKFHMN_18080: Leu_trna - tRNA-Leu(gag), at 3,511,740 to 3,511,826 _trna OKFHMN_18085: yhbX - Putative transferase YhbX, at 3,512,393 to 3,513,910 yhbX Position (kb) 3511 3512Strain fitness (log2 ratio) -2 -1 0 1 2at 3511.175 kb on + strandat 3511.175 kb on + strandat 3511.392 kb on + strandat 3511.392 kb on + strandat 3511.392 kb on + strandat 3511.396 kb on + strandat 3511.422 kb on + strandat 3511.467 kb on + strand, within secGat 3511.479 kb on + strand, within secGat 3511.577 kb on + strand, within secGat 3511.614 kb on + strand, within secGat 3511.614 kb on + strand, within secGat 3511.897 kb on + strandat 3511.898 kb on - strandat 3511.927 kb on + strandat 3511.935 kb on - strandat 3512.004 kb on + strandat 3512.045 kb on + strandat 3512.046 kb on - strandat 3512.094 kb on - strandat 3512.336 kb on + strandat 3512.337 kb on - strandat 3512.341 kb on + strandat 3512.341 kb on + strandat 3512.443 kb on + strandat 3512.446 kb on - strandat 3512.512 kb on + strandat 3512.513 kb on - strandat 3512.513 kb on - strandat 3512.513 kb on - strandat 3512.516 kb on - strandat 3512.516 kb on - strandat 3512.523 kb on - strandat 3512.534 kb on - strandat 3512.534 kb on - strandat 3512.618 kb on + strand, within yhbXat 3512.808 kb on - strand, within yhbX

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
3,511,175 + -0.5
3,511,175 + +0.3
3,511,392 + +0.1
3,511,392 + -0.0
3,511,392 + -0.4
3,511,396 + -0.2
3,511,422 + +0.8
3,511,467 + secG OKFHMN_18075 0.22 +1.3
3,511,479 + secG OKFHMN_18075 0.26 -0.8
3,511,577 + secG OKFHMN_18075 0.55 +0.0
3,511,614 + secG OKFHMN_18075 0.66 +0.1
3,511,614 + secG OKFHMN_18075 0.66 +0.3
3,511,897 + +0.5
3,511,898 - -0.1
3,511,927 + +0.3
3,511,935 - +0.2
3,512,004 + +0.2
3,512,045 + +0.6
3,512,046 - +0.2
3,512,094 - +0.5
3,512,336 + +1.6
3,512,337 - +0.2
3,512,341 + -2.5
3,512,341 + -1.6
3,512,443 + +0.9
3,512,446 - -0.1
3,512,512 + +1.9
3,512,513 - +0.1
3,512,513 - -0.2
3,512,513 - -0.6
3,512,516 - +0.2
3,512,516 - +0.3
3,512,523 - +0.1
3,512,534 - +0.1
3,512,534 - +0.2
3,512,618 + yhbX OKFHMN_18085 0.15 -0.2
3,512,808 - yhbX OKFHMN_18085 0.27 +0.5

Or see this region's nucleotide sequence