Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14985

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_14975 and OKFHMN_14980 overlap by 50 nucleotidesOKFHMN_14980 and OKFHMN_14985 are separated by 149 nucleotidesOKFHMN_14985 and yidC are separated by 105 nucleotides OKFHMN_14975: OKFHMN_14975 - toxin, at 2,898,335 to 2,900,323 _14975 OKFHMN_14980: OKFHMN_14980 - hypothetical protein, at 2,900,274 to 2,900,504 _14980 OKFHMN_14985: OKFHMN_14985 - tRNA modification GTPase MnmE, at 2,900,654 to 2,902,018 _14985 OKFHMN_14990: yidC - membrane protein insertase YidC, at 2,902,124 to 2,903,770 yidC Position (kb) 2900 2901 2902 2903Strain fitness (log2 ratio) -1 0 1at 2899.965 kb on + strand, within OKFHMN_14975at 2900.042 kb on + strand, within OKFHMN_14975at 2900.154 kb on + strandat 2900.280 kb on + strandat 2900.281 kb on - strandat 2900.385 kb on + strand, within OKFHMN_14980at 2900.389 kb on + strand, within OKFHMN_14980at 2900.636 kb on + strandat 2900.637 kb on - strandat 2900.637 kb on - strandat 2900.637 kb on - strandat 2900.637 kb on - strandat 2900.639 kb on - strandat 2900.655 kb on + strandat 2900.656 kb on - strandat 2901.388 kb on + strand, within OKFHMN_14985at 2902.000 kb on + strandat 2902.107 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
2,899,965 + OKFHMN_14975 0.82 +1.1
2,900,042 + OKFHMN_14975 0.86 -0.3
2,900,154 + -0.4
2,900,280 + +0.6
2,900,281 - +0.5
2,900,385 + OKFHMN_14980 0.48 +0.5
2,900,389 + OKFHMN_14980 0.50 -0.3
2,900,636 + +0.2
2,900,637 - +0.4
2,900,637 - -0.1
2,900,637 - -0.4
2,900,637 - +0.2
2,900,639 - -0.1
2,900,655 + +1.5
2,900,656 - -0.8
2,901,388 + OKFHMN_14985 0.54 -0.3
2,902,000 + -1.7
2,902,107 - -0.1

Or see this region's nucleotide sequence