Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14850

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglmU and glmS are separated by 161 nucleotidesglmS and lpfA2 are separated by 699 nucleotides OKFHMN_14845: glmU - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 2,866,435 to 2,867,805 glmU OKFHMN_14850: glmS - glutamine--fructose-6-phosphate transaminase (isomerizing), at 2,867,967 to 2,869,796 glmS OKFHMN_14855: lpfA2 - long polar fimbria major subunit LpfA2, at 2,870,496 to 2,871,098 lpfA2 Position (kb) 2867 2868 2869 2870Strain fitness (log2 ratio) -2 -1 0 1 2at 2867.844 kb on - strandat 2867.848 kb on + strandat 2867.848 kb on + strandat 2867.848 kb on + strandat 2867.848 kb on + strandat 2867.849 kb on - strandat 2867.849 kb on - strandat 2867.849 kb on - strandat 2867.849 kb on - strandat 2867.849 kb on - strandat 2867.850 kb on - strandat 2867.873 kb on + strandat 2867.946 kb on + strandat 2867.948 kb on + strandat 2869.795 kb on - strandat 2869.846 kb on + strandat 2869.856 kb on - strandat 2869.864 kb on - strandat 2870.041 kb on + strandat 2870.516 kb on - strandat 2870.606 kb on + strand, within lpfA2at 2870.631 kb on - strand, within lpfA2at 2870.790 kb on - strand, within lpfA2

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,867,844 - -2.1
2,867,848 + -0.5
2,867,848 + +0.6
2,867,848 + +0.3
2,867,848 + -0.3
2,867,849 - +1.2
2,867,849 - +1.7
2,867,849 - -0.2
2,867,849 - +1.1
2,867,849 - +1.8
2,867,850 - +1.0
2,867,873 + +0.1
2,867,946 + +0.4
2,867,948 + -0.5
2,869,795 - -0.6
2,869,846 + -0.0
2,869,856 - +0.5
2,869,864 - -0.1
2,870,041 + +0.7
2,870,516 - -0.1
2,870,606 + lpfA2 OKFHMN_14855 0.18 +1.1
2,870,631 - lpfA2 OKFHMN_14855 0.22 +0.1
2,870,790 - lpfA2 OKFHMN_14855 0.49 +0.5

Or see this region's nucleotide sequence