Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13595

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,614,075	+	argE	OKFHMN_13590	0.45	-0.6
2,614,094	+	argE	OKFHMN_13590	0.47	-0.7
2,614,095	-	argE	OKFHMN_13590	0.47	-2.2
2,614,095	-	argE	OKFHMN_13590	0.47	-0.6
2,614,103	+	argE	OKFHMN_13590	0.47	-2.7
2,614,103	+	argE	OKFHMN_13590	0.47	-2.8
2,614,104	-	argE	OKFHMN_13590	0.47	-2.6
2,614,104	-	argE	OKFHMN_13590	0.47	-1.6
2,614,166	+	argE	OKFHMN_13590	0.53	-2.6
2,614,172	+	argE	OKFHMN_13590	0.53	-2.1
2,614,174	+	argE	OKFHMN_13590	0.53	-1.9
2,614,174	+	argE	OKFHMN_13590	0.53	-0.7
2,614,175	-	argE	OKFHMN_13590	0.54	-2.3
2,614,175	-	argE	OKFHMN_13590	0.54	-3.9
2,614,175	-	argE	OKFHMN_13590	0.54	-0.2
2,614,180	+	argE	OKFHMN_13590	0.54	-4.3
2,614,180	+	argE	OKFHMN_13590	0.54	-1.4
2,614,180	+	argE	OKFHMN_13590	0.54	-1.2
2,614,181	-	argE	OKFHMN_13590	0.54	-0.4
2,614,202	+	argE	OKFHMN_13590	0.56	-1.1
2,614,307	+	argE	OKFHMN_13590	0.65	-4.9
2,614,313	+	argE	OKFHMN_13590	0.66	-2.9
2,614,338	-	argE	OKFHMN_13590	0.68	-3.3
2,614,545	+	argE	OKFHMN_13590	0.86	-3.9
2,614,546	-	argE	OKFHMN_13590	0.86	-4.9
2,614,576	+	argE	OKFHMN_13590	0.88	-1.8
2,614,577	-	argE	OKFHMN_13590	0.88	-1.8
2,614,636	-				-4.7
2,614,653	-				-3.5
2,614,653	-				-2.0
2,614,715	-				-0.3
2,614,773	+				-0.2
2,614,801	+				-1.5
2,614,810	+				+0.0
2,614,811	-				-0.2
2,614,824	+				-3.0
2,614,858	-				+0.1
2,614,892	-				-0.4
2,614,907	-				-0.8
2,614,907	-				+0.3
2,614,907	-				-0.2
2,615,060	+				-2.9
2,615,060	+				-2.3
2,615,061	-				-3.3
2,615,061	-				-3.7
2,615,073	+				-5.4
2,615,087	+				-2.3
2,615,090	+				-3.1
2,615,090	+				-4.4
2,615,090	+				-0.8
2,615,091	-				-2.8
2,615,091	-				-3.3
2,615,091	-				-6.4
2,615,099	+				-5.3
2,615,100	-				-1.5
2,615,177	+				-1.9
2,615,177	+				-5.1
2,615,178	-				-2.6
2,615,178	-				-1.8
2,615,228	-				-0.2
2,615,228	-				-2.1
2,615,322	+				-2.3
2,615,322	+				-3.4
2,615,388	-	ppc	OKFHMN_13595	0.12	-1.8
2,615,556	-	ppc	OKFHMN_13595	0.19	-1.1
2,615,565	+	ppc	OKFHMN_13595	0.19	-3.9
2,615,622	-	ppc	OKFHMN_13595	0.21	-3.3
2,615,796	-	ppc	OKFHMN_13595	0.28	-3.0
2,615,796	-	ppc	OKFHMN_13595	0.28	-2.6
2,615,907	-	ppc	OKFHMN_13595	0.32	-2.8
2,616,001	-	ppc	OKFHMN_13595	0.35	-1.9
2,616,001	-	ppc	OKFHMN_13595	0.35	-0.6
2,616,130	-	ppc	OKFHMN_13595	0.40	-4.5
2,616,138	+	ppc	OKFHMN_13595	0.41	-3.0
2,616,139	-	ppc	OKFHMN_13595	0.41	-2.1
2,616,294	+	ppc	OKFHMN_13595	0.46	-3.6
2,616,295	-	ppc	OKFHMN_13595	0.47	-0.2
2,616,312	+	ppc	OKFHMN_13595	0.47	-3.5
2,616,921	+	ppc	OKFHMN_13595	0.70	-3.5
2,616,961	-	ppc	OKFHMN_13595	0.72	-3.5
2,617,039	+	ppc	OKFHMN_13595	0.75	-3.3
2,617,040	-	ppc	OKFHMN_13595	0.75	-2.5
2,617,071	+	ppc	OKFHMN_13595	0.76	-4.4
2,617,072	-	ppc	OKFHMN_13595	0.76	-5.4
2,617,075	+	ppc	OKFHMN_13595	0.76	-3.9
2,617,075	+	ppc	OKFHMN_13595	0.76	-4.3
2,617,076	-	ppc	OKFHMN_13595	0.76	-3.4
2,617,102	-	ppc	OKFHMN_13595	0.77	-3.2
2,617,116	-	ppc	OKFHMN_13595	0.77	-4.7
2,617,195	+	ppc	OKFHMN_13595	0.80	-2.8
2,617,316	+	ppc	OKFHMN_13595	0.85	-1.2
2,617,402	-	ppc	OKFHMN_13595	0.88	-2.6
2,617,404	+	ppc	OKFHMN_13595	0.88	-2.9
2,617,404	+	ppc	OKFHMN_13595	0.88	-3.2
2,617,404	+	ppc	OKFHMN_13595	0.88	-4.7
2,617,405	-	ppc	OKFHMN_13595	0.88	-2.2
2,617,405	-	ppc	OKFHMN_13595	0.88	-3.6
2,617,442	-	ppc	OKFHMN_13595	0.90	-3.6
2,617,445	+	ppc	OKFHMN_13595	0.90	-3.9
2,617,446	-	ppc	OKFHMN_13595	0.90	-4.7
2,617,552	+				-2.2
2,617,560	-				-3.8
2,617,560	-				-2.3
2,617,560	-				-2.9
2,617,583	-				-2.9
2,617,673	+				-3.5
2,617,674	-				-3.8
2,617,694	+				-3.7
2,617,695	-				-3.1
2,617,762	+				+0.5
2,617,773	+				-1.9
2,617,774	-				-0.1
2,617,793	+				-0.9
2,617,793	+				+0.8
2,617,793	+				+0.1
2,617,794	-				-0.5
2,617,794	-				+0.5
2,617,794	-				-0.0
2,617,837	+				-0.5
2,617,837	+				+0.1
2,617,838	-				+0.3
2,617,891	+				-1.8
2,617,891	+				+1.1
2,617,891	+				+0.5
2,617,891	+				-1.5
2,617,891	+				+0.6
2,617,892	-				-0.0
2,617,892	-				+0.4
2,617,892	-				-0.6
2,617,894	+				-0.2
2,617,894	+				-2.9
2,617,894	+				-2.7
2,617,894	+				-0.5
2,617,895	-				+0.1
2,617,987	-				-0.1
2,617,996	+				+0.1
2,617,997	-				+0.2
2,618,012	+				-0.0
2,618,014	+				-0.2
2,618,015	-				-0.3
2,618,157	-	ibeC	OKFHMN_13600	0.15	-0.3
2,618,159	+	ibeC	OKFHMN_13600	0.15	-0.1
2,618,159	+	ibeC	OKFHMN_13600	0.15	+0.7
2,618,159	+	ibeC	OKFHMN_13600	0.15	-0.7
2,618,159	+	ibeC	OKFHMN_13600	0.15	-0.8
2,618,160	-	ibeC	OKFHMN_13600	0.15	-0.2
2,618,160	-	ibeC	OKFHMN_13600	0.15	+0.0
2,618,160	-	ibeC	OKFHMN_13600	0.15	-0.3
2,618,160	-	ibeC	OKFHMN_13600	0.15	-0.3
2,618,160	-	ibeC	OKFHMN_13600	0.15	-0.4
2,618,242	-	ibeC	OKFHMN_13600	0.20	+0.6
2,618,242	-	ibeC	OKFHMN_13600	0.20	+0.2
2,618,330	+	ibeC	OKFHMN_13600	0.25	-1.1
2,618,330	+	ibeC	OKFHMN_13600	0.25	+1.0
2,618,330	+	ibeC	OKFHMN_13600	0.25	+0.5
2,618,331	-	ibeC	OKFHMN_13600	0.25	-0.0
2,618,332	+	ibeC	OKFHMN_13600	0.25	+0.6
2,618,351	+	ibeC	OKFHMN_13600	0.26	-0.0
2,618,352	-	ibeC	OKFHMN_13600	0.26	+0.1
2,618,352	-	ibeC	OKFHMN_13600	0.26	-0.2
2,618,376	-	ibeC	OKFHMN_13600	0.28	+0.0
2,618,407	+	ibeC	OKFHMN_13600	0.30	+0.4
2,618,407	+	ibeC	OKFHMN_13600	0.30	+0.2
2,618,407	+	ibeC	OKFHMN_13600	0.30	+0.2
2,618,407	+	ibeC	OKFHMN_13600	0.30	+0.0
2,618,408	-	ibeC	OKFHMN_13600	0.30	-0.4
2,618,499	-	ibeC	OKFHMN_13600	0.35	-2.1
2,618,508	-	ibeC	OKFHMN_13600	0.35	+0.0
2,618,657	+	ibeC	OKFHMN_13600	0.44	+1.0
2,618,658	-	ibeC	OKFHMN_13600	0.44	+0.0