Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_13410 and rpoC are separated by 212 nucleotides rpoC and rpoB_R687H are separated by 76 nucleotides
OKFHMN_13410: OKFHMN_13410 - stationary phase growth adaptation protein, at 2,575,917 to 2,576,360
_13410
OKFHMN_13415: rpoC - DNA-directed RNA polymerase subunit beta', at 2,576,573 to 2,580,796
rpoC
OKFHMN_13420: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 2,580,873 to 2,584,901
_R687H
Position (kb)
2576
2577
2578
2579
2580
2581 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2575.698 kb on + strand at 2575.699 kb on - strand at 2575.706 kb on + strand at 2575.707 kb on - strand at 2575.707 kb on - strand at 2575.710 kb on + strand at 2575.718 kb on + strand at 2575.719 kb on - strand at 2575.855 kb on + strand at 2575.878 kb on + strand at 2575.878 kb on + strand at 2575.919 kb on - strand at 2576.004 kb on + strand, within OKFHMN_13410 at 2576.005 kb on - strand, within OKFHMN_13410 at 2576.026 kb on + strand, within OKFHMN_13410 at 2576.026 kb on + strand, within OKFHMN_13410 at 2576.026 kb on + strand, within OKFHMN_13410 at 2576.026 kb on + strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.027 kb on - strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.030 kb on + strand, within OKFHMN_13410 at 2576.031 kb on - strand, within OKFHMN_13410 at 2576.085 kb on + strand, within OKFHMN_13410 at 2576.105 kb on + strand, within OKFHMN_13410 at 2576.106 kb on - strand, within OKFHMN_13410 at 2576.149 kb on + strand, within OKFHMN_13410 at 2576.150 kb on - strand, within OKFHMN_13410 at 2576.150 kb on - strand, within OKFHMN_13410 at 2576.160 kb on + strand, within OKFHMN_13410 at 2576.161 kb on - strand, within OKFHMN_13410 at 2576.188 kb on + strand, within OKFHMN_13410 at 2576.189 kb on - strand, within OKFHMN_13410 at 2576.215 kb on + strand, within OKFHMN_13410 at 2576.215 kb on + strand, within OKFHMN_13410 at 2576.216 kb on - strand, within OKFHMN_13410 at 2576.239 kb on - strand, within OKFHMN_13410 at 2576.273 kb on + strand, within OKFHMN_13410 at 2576.390 kb on + strand at 2576.391 kb on - strand at 2576.391 kb on - strand at 2576.391 kb on - strand at 2576.391 kb on - strand at 2576.393 kb on + strand at 2576.393 kb on + strand at 2576.422 kb on + strand at 2576.423 kb on - strand at 2576.442 kb on + strand at 2576.445 kb on + strand at 2576.446 kb on - strand at 2576.446 kb on - strand at 2576.455 kb on + strand at 2576.456 kb on - strand at 2576.464 kb on + strand at 2576.470 kb on + strand at 2576.470 kb on + strand at 2576.489 kb on + strand at 2576.526 kb on - strand at 2576.552 kb on - strand at 2576.690 kb on - strand at 2576.690 kb on - strand at 2576.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,575,698 + +1.1 2,575,699 - +0.8 2,575,706 + -0.4 2,575,707 - +0.1 2,575,707 - +0.8 2,575,710 + +0.0 2,575,718 + +0.4 2,575,719 - -0.4 2,575,855 + +0.3 2,575,878 + -0.3 2,575,878 + -0.2 2,575,919 - -0.4 2,576,004 + OKFHMN_13410 0.20 +0.4 2,576,005 - OKFHMN_13410 0.20 +0.2 2,576,026 + OKFHMN_13410 0.25 +0.3 2,576,026 + OKFHMN_13410 0.25 -0.8 2,576,026 + OKFHMN_13410 0.25 +0.3 2,576,026 + OKFHMN_13410 0.25 -0.1 2,576,027 - OKFHMN_13410 0.25 +0.2 2,576,027 - OKFHMN_13410 0.25 -0.1 2,576,027 - OKFHMN_13410 0.25 +0.5 2,576,027 - OKFHMN_13410 0.25 -1.6 2,576,027 - OKFHMN_13410 0.25 -2.8 2,576,027 - OKFHMN_13410 0.25 -0.9 2,576,027 - OKFHMN_13410 0.25 +0.1 2,576,030 + OKFHMN_13410 0.25 -0.1 2,576,030 + OKFHMN_13410 0.25 -0.2 2,576,030 + OKFHMN_13410 0.25 -0.3 2,576,030 + OKFHMN_13410 0.25 -2.3 2,576,030 + OKFHMN_13410 0.25 +0.1 2,576,030 + OKFHMN_13410 0.25 +0.9 2,576,031 - OKFHMN_13410 0.26 +0.5 2,576,085 + OKFHMN_13410 0.38 +0.1 2,576,105 + OKFHMN_13410 0.42 +0.4 2,576,106 - OKFHMN_13410 0.43 -1.3 2,576,149 + OKFHMN_13410 0.52 +0.4 2,576,150 - OKFHMN_13410 0.52 +1.8 2,576,150 - OKFHMN_13410 0.52 -0.0 2,576,160 + OKFHMN_13410 0.55 -0.3 2,576,161 - OKFHMN_13410 0.55 +0.2 2,576,188 + OKFHMN_13410 0.61 -0.6 2,576,189 - OKFHMN_13410 0.61 +1.1 2,576,215 + OKFHMN_13410 0.67 -0.7 2,576,215 + OKFHMN_13410 0.67 +0.0 2,576,216 - OKFHMN_13410 0.67 +0.8 2,576,239 - OKFHMN_13410 0.73 +1.2 2,576,273 + OKFHMN_13410 0.80 -1.2 2,576,390 + +0.2 2,576,391 - +0.2 2,576,391 - -0.2 2,576,391 - +0.1 2,576,391 - +0.1 2,576,393 + +0.5 2,576,393 + +0.1 2,576,422 + +0.2 2,576,423 - -3.2 2,576,442 + +0.3 2,576,445 + -1.5 2,576,446 - -0.1 2,576,446 - +0.5 2,576,455 + -0.3 2,576,456 - +0.1 2,576,464 + +0.3 2,576,470 + +0.3 2,576,470 + -0.1 2,576,489 + -0.4 2,576,526 - +0.2 2,576,552 - -0.1 2,576,690 - -2.9 2,576,690 - +0.5 2,576,704 - -0.0
Or see this region's nucleotide sequence