Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11700

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzorE and nanM are separated by 245 nucleotidesnanM and OKFHMN_11705 overlap by 14 nucleotides OKFHMN_11695: zorE - Zorya protein ZorE, at 2,240,225 to 2,241,328 zorE OKFHMN_11700: nanM - N-acetylneuraminic acid mutarotase, at 2,241,574 to 2,241,882 nanM OKFHMN_11705: OKFHMN_11705 - HNH endonuclease, at 2,241,869 to 2,242,720 _11705 Position (kb) 2241 2242Strain fitness (log2 ratio) -2 -1 0 1at 2240.653 kb on + strand, within zorEat 2240.918 kb on + strand, within zorEat 2241.115 kb on + strand, within zorEat 2241.452 kb on + strandat 2241.461 kb on - strandat 2241.461 kb on - strandat 2241.465 kb on + strandat 2241.466 kb on - strandat 2241.480 kb on - strandat 2241.552 kb on + strandat 2241.553 kb on - strandat 2241.619 kb on + strand, within nanMat 2241.620 kb on - strand, within nanMat 2241.702 kb on - strand, within nanMat 2241.965 kb on + strand, within OKFHMN_11705at 2241.965 kb on + strand, within OKFHMN_11705at 2241.969 kb on + strand, within OKFHMN_11705at 2241.970 kb on - strand, within OKFHMN_11705at 2242.044 kb on + strand, within OKFHMN_11705at 2242.104 kb on + strand, within OKFHMN_11705at 2242.105 kb on - strand, within OKFHMN_11705at 2242.128 kb on + strand, within OKFHMN_11705at 2242.230 kb on - strand, within OKFHMN_11705at 2242.307 kb on - strand, within OKFHMN_11705at 2242.375 kb on - strand, within OKFHMN_11705at 2242.401 kb on - strand, within OKFHMN_11705at 2242.402 kb on + strand, within OKFHMN_11705at 2242.407 kb on - strand, within OKFHMN_11705at 2242.407 kb on - strand, within OKFHMN_11705at 2242.608 kb on + strand, within OKFHMN_11705

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,240,653 + zorE OKFHMN_11695 0.39 +0.8
2,240,918 + zorE OKFHMN_11695 0.63 -0.1
2,241,115 + zorE OKFHMN_11695 0.81 +0.7
2,241,452 + +0.6
2,241,461 - +0.6
2,241,461 - +0.2
2,241,465 + +0.7
2,241,466 - +1.0
2,241,480 - +0.1
2,241,552 + +0.2
2,241,553 - +0.7
2,241,619 + nanM OKFHMN_11700 0.15 -0.6
2,241,620 - nanM OKFHMN_11700 0.15 -0.4
2,241,702 - nanM OKFHMN_11700 0.41 +0.1
2,241,965 + OKFHMN_11705 0.11 +0.0
2,241,965 + OKFHMN_11705 0.11 -1.8
2,241,969 + OKFHMN_11705 0.12 +0.9
2,241,970 - OKFHMN_11705 0.12 -1.0
2,242,044 + OKFHMN_11705 0.21 -0.8
2,242,104 + OKFHMN_11705 0.28 +0.0
2,242,105 - OKFHMN_11705 0.28 -0.2
2,242,128 + OKFHMN_11705 0.30 -0.2
2,242,230 - OKFHMN_11705 0.42 +0.5
2,242,307 - OKFHMN_11705 0.51 -0.1
2,242,375 - OKFHMN_11705 0.59 +0.8
2,242,401 - OKFHMN_11705 0.62 +0.1
2,242,402 + OKFHMN_11705 0.63 -0.1
2,242,407 - OKFHMN_11705 0.63 +0.4
2,242,407 - OKFHMN_11705 0.63 +0.3
2,242,608 + OKFHMN_11705 0.87 +1.4

Or see this region's nucleotide sequence