Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11160

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,110,101	-	robA	OKFHMN_11150	0.67	-0.8
2,110,101	-	robA	OKFHMN_11150	0.67	-1.9
2,110,105	+	robA	OKFHMN_11150	0.68	+0.5
2,110,105	+	robA	OKFHMN_11150	0.68	+0.4
2,110,142	-	robA	OKFHMN_11150	0.72	-1.2
2,110,142	-	robA	OKFHMN_11150	0.72	-3.2
2,110,142	-	robA	OKFHMN_11150	0.72	+0.3
2,110,142	-	robA	OKFHMN_11150	0.72	-1.1
2,110,145	+	robA	OKFHMN_11150	0.73	-0.1
2,110,145	+	robA	OKFHMN_11150	0.73	-0.0
2,110,145	+	robA	OKFHMN_11150	0.73	-0.0
2,110,145	+	robA	OKFHMN_11150	0.73	+0.2
2,110,146	-	robA	OKFHMN_11150	0.73	+0.9
2,110,183	+	robA	OKFHMN_11150	0.77	+0.2
2,110,183	+	robA	OKFHMN_11150	0.77	+0.2
2,110,195	-	robA	OKFHMN_11150	0.78	+0.6
2,110,198	+	robA	OKFHMN_11150	0.79	+0.8
2,110,198	+	robA	OKFHMN_11150	0.79	+0.5
2,110,198	+	robA	OKFHMN_11150	0.79	-0.1
2,110,199	-	robA	OKFHMN_11150	0.79	+0.6
2,110,244	-	robA	OKFHMN_11150	0.84	+1.1
2,110,244	-	robA	OKFHMN_11150	0.84	-0.6
2,110,282	-	robA	OKFHMN_11150	0.88	+0.0
2,110,303	+				+0.4
2,110,304	-				+0.6
2,110,345	-				+0.3
2,110,399	-				+0.0
2,110,478	-		OKFHMN_11155	0.15	+1.3
2,110,512	+		OKFHMN_11155	0.20	-0.1
2,110,512	+		OKFHMN_11155	0.20	-4.1
2,110,612	-		OKFHMN_11155	0.36	-0.1
2,110,751	+		OKFHMN_11155	0.57	+0.1
2,110,752	-		OKFHMN_11155	0.57	-0.2
2,110,779	+		OKFHMN_11155	0.62	-0.9
2,110,780	-		OKFHMN_11155	0.62	+0.3
2,110,780	-		OKFHMN_11155	0.62	-0.3
2,110,860	+		OKFHMN_11155	0.74	-0.4
2,110,868	+		OKFHMN_11155	0.75	+0.1
2,110,878	-		OKFHMN_11155	0.77	-0.2
2,111,010	+				+0.0
2,111,014	+				+0.5
2,111,014	+				-0.2
2,111,014	+				-0.5
2,111,014	+				-0.3
2,111,015	-				+0.4
2,111,016	+				+0.8
2,111,016	+				+0.1
2,111,017	-				+1.0
2,111,017	-				+0.7
2,111,017	-				+1.4
2,111,017	-				+1.1
2,111,022	+				+0.4
2,111,023	-				+0.2
2,111,050	+				+0.1
2,111,172	-	yjjX	OKFHMN_11160	0.18	-0.0
2,111,484	-	yjjX	OKFHMN_11160	0.79	+0.5
2,111,484	-	yjjX	OKFHMN_11160	0.79	+0.1
2,111,539	-	yjjX	OKFHMN_11160	0.90	-0.1
2,111,576	+				-0.1
2,111,577	-				+0.2
2,111,586	+				+0.6
2,111,586	+				-0.1
2,111,587	-				+3.3
2,111,587	-				-1.0
2,111,587	-				-0.9
2,111,587	-				+1.2
2,111,590	-				+0.0
2,111,619	-				+0.1
2,111,619	-				-0.3
2,111,722	+				+0.6
2,111,853	-	trpR	OKFHMN_11165	0.39	+0.5
2,111,897	-	trpR	OKFHMN_11165	0.54	+0.1
2,111,976	+	trpR	OKFHMN_11165	0.80	-0.2
2,111,986	+	trpR	OKFHMN_11165	0.84	-1.8
2,112,006	-				-0.8
2,112,045	+				-0.2
2,112,067	+				+0.3
2,112,067	+				-0.1
2,112,067	+				-0.0
2,112,068	-				-0.6
2,112,068	-				+0.1
2,112,127	+				+1.2
2,112,137	+				-0.9
2,112,142	+				+1.3
2,112,142	+				+0.6
2,112,143	-				-0.5
2,112,143	-				-0.1
2,112,143	-				-2.3
2,112,143	-				-0.0
2,112,143	-				-1.5
2,112,143	-				+0.5
2,112,143	-				-0.3
2,112,218	+				-2.5
2,112,221	+				-1.2
2,112,222	-				-1.0
2,112,354	+	sltY	OKFHMN_11170	0.10	-1.0
2,112,355	-	sltY	OKFHMN_11170	0.10	-1.2
2,112,356	+	sltY	OKFHMN_11170	0.10	-1.1
2,112,357	-	sltY	OKFHMN_11170	0.10	-2.0
2,112,357	-	sltY	OKFHMN_11170	0.10	+0.1
2,112,375	+	sltY	OKFHMN_11170	0.11	-1.7
2,112,381	+	sltY	OKFHMN_11170	0.12	-0.9
2,112,398	+	sltY	OKFHMN_11170	0.13	+0.6
2,112,404	+	sltY	OKFHMN_11170	0.13	-5.0
2,112,404	+	sltY	OKFHMN_11170	0.13	-1.5
2,112,433	-	sltY	OKFHMN_11170	0.14	-1.7
2,112,468	+	sltY	OKFHMN_11170	0.16	-1.7
2,112,468	+	sltY	OKFHMN_11170	0.16	-1.5
2,112,468	+	sltY	OKFHMN_11170	0.16	-2.0
2,112,481	-	sltY	OKFHMN_11170	0.17	-4.2
2,112,498	+	sltY	OKFHMN_11170	0.18	-2.6
2,112,520	-	sltY	OKFHMN_11170	0.19	-3.5