Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10515

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,976,258	-	pdhR	OKFHMN_10510	0.54	-0.7
1,976,258	-	pdhR	OKFHMN_10510	0.54	-0.2
1,976,258	-	pdhR	OKFHMN_10510	0.54	-0.6
1,976,744	-				-0.6
1,976,756	+				-0.5
1,976,756	+				+0.7
1,976,757	-				-0.3
1,976,758	+				+0.7
1,976,758	+				+0.7
1,976,758	+				+0.1
1,976,759	-				-0.5
1,976,759	-				-0.6
1,976,759	-				-0.3
1,976,760	+				-0.1
1,976,761	-				-0.6
1,976,761	-				+0.6
1,976,776	+				+0.4
1,976,799	+				+0.1
1,976,799	+				+0.2
1,976,803	+				-0.1
1,976,829	+				+0.2
1,976,985	-				+0.3
1,977,120	-				+0.4
1,977,196	+				+0.6
1,977,208	+				-0.3
1,977,250	-				-1.3
1,977,274	-				+0.0
1,977,388	+	aroP	OKFHMN_10515	0.17	-0.1
1,977,403	+	aroP	OKFHMN_10515	0.18	+0.5
1,977,404	-	aroP	OKFHMN_10515	0.18	-1.7
1,977,407	+	aroP	OKFHMN_10515	0.18	+0.9
1,977,447	-	aroP	OKFHMN_10515	0.21	+0.4
1,977,500	+	aroP	OKFHMN_10515	0.25	-1.2
1,977,588	+	aroP	OKFHMN_10515	0.32	-0.3
1,977,589	-	aroP	OKFHMN_10515	0.32	-0.7
1,977,626	-	aroP	OKFHMN_10515	0.34	+0.4
1,977,634	+	aroP	OKFHMN_10515	0.35	-0.5
1,977,779	-	aroP	OKFHMN_10515	0.46	+1.3
1,977,779	-	aroP	OKFHMN_10515	0.46	+0.9
1,977,865	+	aroP	OKFHMN_10515	0.52	-0.1
1,977,874	+	aroP	OKFHMN_10515	0.52	+0.2
1,977,874	+	aroP	OKFHMN_10515	0.52	+0.1
1,977,875	-	aroP	OKFHMN_10515	0.53	-0.5
1,977,875	-	aroP	OKFHMN_10515	0.53	-0.5
1,977,879	-	aroP	OKFHMN_10515	0.53	-0.2
1,977,879	-	aroP	OKFHMN_10515	0.53	-0.7
1,977,897	-	aroP	OKFHMN_10515	0.54	+0.2
1,977,955	+	aroP	OKFHMN_10515	0.58	+0.4
1,978,062	+	aroP	OKFHMN_10515	0.66	+0.5
1,978,063	-	aroP	OKFHMN_10515	0.66	+0.9
1,978,065	-	aroP	OKFHMN_10515	0.66	-1.4
1,978,079	-	aroP	OKFHMN_10515	0.67	-0.1
1,978,135	+	aroP	OKFHMN_10515	0.71	-1.4
1,978,201	+	aroP	OKFHMN_10515	0.76	+0.5
1,978,202	-	aroP	OKFHMN_10515	0.76	-2.0
1,978,206	-	aroP	OKFHMN_10515	0.77	-0.2
1,978,236	+	aroP	OKFHMN_10515	0.79	-1.2
1,978,237	-	aroP	OKFHMN_10515	0.79	-1.7
1,978,295	-	aroP	OKFHMN_10515	0.83	+0.2
1,978,295	-	aroP	OKFHMN_10515	0.83	-0.2
1,978,295	-	aroP	OKFHMN_10515	0.83	-0.6
1,978,408	+				-0.0
1,978,443	-				-0.8
1,978,470	+				-0.1
1,978,470	+				+0.1
1,978,471	-				+2.1
1,978,482	-				+0.7
1,978,718	+	ampE	OKFHMN_10520	0.18	-1.4
1,978,718	+	ampE	OKFHMN_10520	0.18	+0.3
1,978,718	+	ampE	OKFHMN_10520	0.18	-0.5
1,978,719	-	ampE	OKFHMN_10520	0.18	+0.4
1,978,800	+	ampE	OKFHMN_10520	0.27	-0.2
1,978,800	+	ampE	OKFHMN_10520	0.27	-0.0
1,978,800	+	ampE	OKFHMN_10520	0.27	-0.3
1,978,801	-	ampE	OKFHMN_10520	0.27	-0.5
1,978,801	-	ampE	OKFHMN_10520	0.27	+0.4
1,978,802	+	ampE	OKFHMN_10520	0.27	-0.4
1,978,803	-	ampE	OKFHMN_10520	0.27	+0.4
1,978,803	-	ampE	OKFHMN_10520	0.27	+0.0
1,978,839	-	ampE	OKFHMN_10520	0.32	-0.1
1,978,839	-	ampE	OKFHMN_10520	0.32	-0.0
1,979,117	-	ampE	OKFHMN_10520	0.64	-0.6
1,979,117	-	ampE	OKFHMN_10520	0.64	+0.1
1,979,122	+	ampE	OKFHMN_10520	0.65	+1.3
1,979,142	+	ampE	OKFHMN_10520	0.67	-0.0
1,979,143	-	ampE	OKFHMN_10520	0.67	-0.8
1,979,143	-	ampE	OKFHMN_10520	0.67	+0.2
1,979,180	-	ampE	OKFHMN_10520	0.72	+0.2
1,979,232	-	ampE	OKFHMN_10520	0.78	+1.3
1,979,255	+	ampE	OKFHMN_10520	0.80	+0.9
1,979,402	+				-0.6
1,979,402	+				+0.3
1,979,410	+				-0.3
1,979,503	-	ampD	OKFHMN_10525	0.15	-0.1
1,979,523	+	ampD	OKFHMN_10525	0.19	-0.1
1,979,524	-	ampD	OKFHMN_10525	0.19	-0.1