Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssG and fha are separated by 24 nucleotides fha and tssJ overlap by 4 nucleotides tssJ and tssK are separated by 2 nucleotides
OKFHMN_09875: tssG - Type VI secretion system protein TssG, at 1,844,267 to 1,845,349
tssG
OKFHMN_09880: fha - Type VI secretion system protein Fha, at 1,845,374 to 1,846,654
fha
OKFHMN_09885: tssJ - Type VI secretion system protein TssJ, at 1,846,651 to 1,847,175
tssJ
OKFHMN_09890: tssK - type VI secretion system baseplate subunit TssK, at 1,847,178 to 1,848,509
tssK
Position (kb) 1845
1846
1847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1844.609 kb on + strand, within tssG at 1844.612 kb on + strand, within tssG at 1844.641 kb on - strand, within tssG at 1844.641 kb on - strand, within tssG at 1844.659 kb on - strand, within tssG at 1844.710 kb on + strand, within tssG at 1844.711 kb on - strand, within tssG at 1844.711 kb on - strand, within tssG at 1844.719 kb on + strand, within tssG at 1844.720 kb on - strand, within tssG at 1844.831 kb on - strand, within tssG at 1844.852 kb on + strand, within tssG at 1844.853 kb on - strand, within tssG at 1844.893 kb on + strand, within tssG at 1844.894 kb on - strand, within tssG at 1845.002 kb on + strand, within tssG at 1845.103 kb on + strand, within tssG at 1845.216 kb on + strand, within tssG at 1845.216 kb on + strand, within tssG at 1845.217 kb on - strand, within tssG at 1845.390 kb on + strand at 1845.545 kb on - strand, within fha at 1845.710 kb on - strand, within fha at 1845.720 kb on - strand, within fha at 1845.786 kb on + strand, within fha at 1845.787 kb on - strand, within fha at 1845.852 kb on + strand, within fha at 1845.904 kb on + strand, within fha at 1845.974 kb on - strand, within fha at 1845.974 kb on - strand, within fha at 1846.037 kb on - strand, within fha at 1846.216 kb on + strand, within fha at 1846.217 kb on - strand, within fha at 1846.539 kb on - strand at 1846.539 kb on - strand at 1846.539 kb on - strand at 1846.542 kb on - strand at 1846.610 kb on + strand at 1846.611 kb on - strand at 1846.611 kb on - strand at 1846.695 kb on - strand at 1846.787 kb on + strand, within tssJ at 1846.787 kb on + strand, within tssJ at 1846.903 kb on + strand, within tssJ at 1846.904 kb on - strand, within tssJ at 1846.951 kb on + strand, within tssJ at 1846.954 kb on - strand, within tssJ at 1847.135 kb on + strand at 1847.173 kb on + strand at 1847.178 kb on - strand at 1847.477 kb on + strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,844,609 + tssG OKFHMN_09875 0.32 +0.0 1,844,612 + tssG OKFHMN_09875 0.32 +0.3 1,844,641 - tssG OKFHMN_09875 0.35 -2.2 1,844,641 - tssG OKFHMN_09875 0.35 +0.3 1,844,659 - tssG OKFHMN_09875 0.36 +1.1 1,844,710 + tssG OKFHMN_09875 0.41 +0.3 1,844,711 - tssG OKFHMN_09875 0.41 +1.1 1,844,711 - tssG OKFHMN_09875 0.41 +0.3 1,844,719 + tssG OKFHMN_09875 0.42 -0.5 1,844,720 - tssG OKFHMN_09875 0.42 +0.2 1,844,831 - tssG OKFHMN_09875 0.52 -0.4 1,844,852 + tssG OKFHMN_09875 0.54 -0.0 1,844,853 - tssG OKFHMN_09875 0.54 +0.3 1,844,893 + tssG OKFHMN_09875 0.58 +1.6 1,844,894 - tssG OKFHMN_09875 0.58 -1.1 1,845,002 + tssG OKFHMN_09875 0.68 -1.7 1,845,103 + tssG OKFHMN_09875 0.77 +2.0 1,845,216 + tssG OKFHMN_09875 0.88 -0.4 1,845,216 + tssG OKFHMN_09875 0.88 +0.7 1,845,217 - tssG OKFHMN_09875 0.88 -0.3 1,845,390 + +0.3 1,845,545 - fha OKFHMN_09880 0.13 +0.5 1,845,710 - fha OKFHMN_09880 0.26 +0.4 1,845,720 - fha OKFHMN_09880 0.27 +0.3 1,845,786 + fha OKFHMN_09880 0.32 -0.0 1,845,787 - fha OKFHMN_09880 0.32 -0.8 1,845,852 + fha OKFHMN_09880 0.37 +0.7 1,845,904 + fha OKFHMN_09880 0.41 +0.1 1,845,974 - fha OKFHMN_09880 0.47 -0.2 1,845,974 - fha OKFHMN_09880 0.47 +0.6 1,846,037 - fha OKFHMN_09880 0.52 +0.6 1,846,216 + fha OKFHMN_09880 0.66 +0.2 1,846,217 - fha OKFHMN_09880 0.66 +0.1 1,846,539 - -0.1 1,846,539 - -0.3 1,846,539 - +0.1 1,846,542 - +0.3 1,846,610 + +0.1 1,846,611 - -0.4 1,846,611 - +0.1 1,846,695 - -0.4 1,846,787 + tssJ OKFHMN_09885 0.26 -0.2 1,846,787 + tssJ OKFHMN_09885 0.26 +0.2 1,846,903 + tssJ OKFHMN_09885 0.48 +1.2 1,846,904 - tssJ OKFHMN_09885 0.48 +0.5 1,846,951 + tssJ OKFHMN_09885 0.57 -0.4 1,846,954 - tssJ OKFHMN_09885 0.58 +0.5 1,847,135 + +0.2 1,847,173 + -0.1 1,847,178 - +0.8 1,847,477 + tssK OKFHMN_09890 0.22 +0.4
Or see this region's nucleotide sequence