Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07810

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_07805 and ybcJ are separated by 1 nucleotidesybcJ and ybcI are separated by 107 nucleotidesybcI and cysS are separated by 35 nucleotides OKFHMN_07805: OKFHMN_07805 - Bifunctional protein FolD, at 1,423,118 to 1,423,984 _07805 OKFHMN_07810: ybcJ - ribosome-associated protein YbcJ, at 1,423,986 to 1,424,198 ybcJ OKFHMN_07815: ybcI - Inner membrane protein YbcI, at 1,424,306 to 1,424,827 ybcI OKFHMN_07820: cysS - cysteine--tRNA ligase, at 1,424,863 to 1,426,248 cysS Position (kb) 1423 1424 1425Strain fitness (log2 ratio) -2 -1 0 1at 1423.095 kb on + strandat 1423.095 kb on + strandat 1423.961 kb on + strandat 1423.982 kb on + strandat 1423.983 kb on - strandat 1424.003 kb on - strandat 1424.006 kb on + strandat 1424.388 kb on + strand, within ybcIat 1424.456 kb on + strand, within ybcIat 1424.523 kb on + strand, within ybcIat 1424.524 kb on - strand, within ybcIat 1424.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,423,095 + -2.1
1,423,095 + -0.9
1,423,961 + +0.6
1,423,982 + +0.2
1,423,983 - +1.2
1,424,003 - -0.1
1,424,006 + -0.0
1,424,388 + ybcI OKFHMN_07815 0.16 +0.5
1,424,456 + ybcI OKFHMN_07815 0.29 -0.2
1,424,523 + ybcI OKFHMN_07815 0.42 -0.4
1,424,524 - ybcI OKFHMN_07815 0.42 -1.0
1,424,856 - +0.2

Or see this region's nucleotide sequence