Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdK and ybdJ are separated by 113 nucleotides ybdJ and ybdF are separated by 64 nucleotides ybdF and nfsB are separated by 93 nucleotides
OKFHMN_07655: ybdK - YbdK family carboxylate-amine ligase, at 1,383,403 to 1,384,521
ybdK
OKFHMN_07660: ybdJ - Uncharacterized protein YbdJ, at 1,384,635 to 1,384,835
ybdJ
OKFHMN_07665: ybdF - MmcQ/YjbR family DNA-binding protein, at 1,384,900 to 1,385,268
ybdF
OKFHMN_07670: nfsB - oxygen-insensitive NAD(P)H nitroreductase, at 1,385,362 to 1,386,015
nfsB
Position (kb)
1384
1385 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1383.776 kb on - strand, within ybdK at 1383.911 kb on - strand, within ybdK at 1383.912 kb on + strand, within ybdK at 1383.912 kb on + strand, within ybdK at 1383.912 kb on + strand, within ybdK at 1383.912 kb on + strand, within ybdK at 1383.913 kb on - strand, within ybdK at 1383.913 kb on - strand, within ybdK at 1383.913 kb on - strand, within ybdK at 1383.913 kb on - strand, within ybdK at 1383.999 kb on + strand, within ybdK at 1384.143 kb on + strand, within ybdK at 1384.231 kb on + strand, within ybdK at 1384.371 kb on + strand, within ybdK at 1384.372 kb on - strand, within ybdK at 1384.572 kb on - strand at 1384.586 kb on + strand at 1384.601 kb on - strand at 1384.683 kb on - strand, within ybdJ at 1384.864 kb on + strand at 1385.101 kb on + strand, within ybdF at 1385.266 kb on + strand at 1385.280 kb on - strand at 1385.300 kb on - strand at 1385.361 kb on + strand at 1385.401 kb on - strand at 1385.467 kb on + strand, within nfsB at 1385.505 kb on + strand, within nfsB at 1385.564 kb on - strand, within nfsB at 1385.564 kb on - strand, within nfsB at 1385.564 kb on - strand, within nfsB at 1385.580 kb on + strand, within nfsB at 1385.581 kb on - strand, within nfsB at 1385.791 kb on + strand, within nfsB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,383,776 - ybdK OKFHMN_07655 0.33 -1.2 1,383,911 - ybdK OKFHMN_07655 0.45 -0.1 1,383,912 + ybdK OKFHMN_07655 0.45 -0.7 1,383,912 + ybdK OKFHMN_07655 0.45 +0.4 1,383,912 + ybdK OKFHMN_07655 0.45 +0.3 1,383,912 + ybdK OKFHMN_07655 0.45 -0.6 1,383,913 - ybdK OKFHMN_07655 0.46 +0.1 1,383,913 - ybdK OKFHMN_07655 0.46 -0.9 1,383,913 - ybdK OKFHMN_07655 0.46 +0.5 1,383,913 - ybdK OKFHMN_07655 0.46 -3.1 1,383,999 + ybdK OKFHMN_07655 0.53 -0.7 1,384,143 + ybdK OKFHMN_07655 0.66 -0.3 1,384,231 + ybdK OKFHMN_07655 0.74 -2.2 1,384,371 + ybdK OKFHMN_07655 0.87 +0.5 1,384,372 - ybdK OKFHMN_07655 0.87 +0.4 1,384,572 - -0.1 1,384,586 + +0.0 1,384,601 - +0.0 1,384,683 - ybdJ OKFHMN_07660 0.24 -0.8 1,384,864 + +0.3 1,385,101 + ybdF OKFHMN_07665 0.54 -3.4 1,385,266 + -0.1 1,385,280 - +0.7 1,385,300 - -1.8 1,385,361 + -0.3 1,385,401 - +1.6 1,385,467 + nfsB OKFHMN_07670 0.16 -0.1 1,385,505 + nfsB OKFHMN_07670 0.22 +0.8 1,385,564 - nfsB OKFHMN_07670 0.31 +0.1 1,385,564 - nfsB OKFHMN_07670 0.31 -2.1 1,385,564 - nfsB OKFHMN_07670 0.31 +0.5 1,385,580 + nfsB OKFHMN_07670 0.33 +1.1 1,385,581 - nfsB OKFHMN_07670 0.33 -0.1 1,385,791 + nfsB OKFHMN_07670 0.66 -0.1
Or see this region's nucleotide sequence