Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zitB and pnuC overlap by 4 nucleotides pnuC and nadA are separated by 37 nucleotides
OKFHMN_06750: zitB - CDF family zinc transporter ZitB, at 1,204,587 to 1,205,528
zitB
OKFHMN_06755: pnuC - nicotinamide riboside transporter PnuC, at 1,205,525 to 1,206,244
pnuC
OKFHMN_06760: nadA - quinolinate synthase NadA, at 1,206,282 to 1,207,325
nadA
Position (kb) 1205
1206
1207 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1204.541 kb on + strand at 1204.542 kb on - strand at 1204.631 kb on + strand at 1204.631 kb on + strand at 1204.635 kb on - strand at 1204.635 kb on - strand at 1204.635 kb on - strand at 1204.653 kb on + strand at 1204.680 kb on - strand at 1204.745 kb on + strand, within zitB at 1204.745 kb on + strand, within zitB at 1205.045 kb on - strand, within zitB at 1205.097 kb on - strand, within zitB at 1205.100 kb on - strand, within zitB at 1205.100 kb on - strand, within zitB at 1205.114 kb on + strand, within zitB at 1205.117 kb on + strand, within zitB at 1205.117 kb on + strand, within zitB at 1205.317 kb on + strand, within zitB at 1205.317 kb on + strand, within zitB at 1205.708 kb on - strand, within pnuC at 1205.739 kb on - strand, within pnuC at 1205.805 kb on - strand, within pnuC at 1205.811 kb on - strand, within pnuC at 1205.867 kb on - strand, within pnuC at 1206.027 kb on - strand, within pnuC at 1206.027 kb on - strand, within pnuC at 1206.137 kb on - strand, within pnuC at 1206.200 kb on + strand at 1206.201 kb on - strand at 1206.207 kb on - strand at 1206.208 kb on + strand at 1206.209 kb on - strand at 1206.209 kb on - strand at 1206.209 kb on - strand at 1206.209 kb on - strand at 1206.209 kb on - strand at 1206.291 kb on + strand at 1206.292 kb on - strand at 1206.292 kb on - strand at 1206.490 kb on - strand, within nadA at 1206.629 kb on + strand, within nadA at 1206.744 kb on + strand, within nadA at 1206.744 kb on + strand, within nadA at 1206.745 kb on - strand, within nadA at 1206.865 kb on - strand, within nadA at 1207.056 kb on - strand, within nadA at 1207.178 kb on + strand, within nadA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,204,541 + +0.2 1,204,542 - -1.6 1,204,631 + +0.6 1,204,631 + +0.3 1,204,635 - +2.0 1,204,635 - -1.3 1,204,635 - -1.0 1,204,653 + -0.8 1,204,680 - +1.0 1,204,745 + zitB OKFHMN_06750 0.17 +0.1 1,204,745 + zitB OKFHMN_06750 0.17 +0.5 1,205,045 - zitB OKFHMN_06750 0.49 -0.4 1,205,097 - zitB OKFHMN_06750 0.54 -3.8 1,205,100 - zitB OKFHMN_06750 0.54 -0.2 1,205,100 - zitB OKFHMN_06750 0.54 +1.8 1,205,114 + zitB OKFHMN_06750 0.56 +1.1 1,205,117 + zitB OKFHMN_06750 0.56 +0.7 1,205,117 + zitB OKFHMN_06750 0.56 +0.8 1,205,317 + zitB OKFHMN_06750 0.77 -0.9 1,205,317 + zitB OKFHMN_06750 0.77 +0.3 1,205,708 - pnuC OKFHMN_06755 0.25 -0.4 1,205,739 - pnuC OKFHMN_06755 0.30 -1.3 1,205,805 - pnuC OKFHMN_06755 0.39 -3.1 1,205,811 - pnuC OKFHMN_06755 0.40 +0.6 1,205,867 - pnuC OKFHMN_06755 0.47 -0.6 1,206,027 - pnuC OKFHMN_06755 0.70 -1.1 1,206,027 - pnuC OKFHMN_06755 0.70 -1.2 1,206,137 - pnuC OKFHMN_06755 0.85 -0.7 1,206,200 + -0.5 1,206,201 - -0.5 1,206,207 - -0.2 1,206,208 + +1.8 1,206,209 - +1.0 1,206,209 - +0.1 1,206,209 - -2.1 1,206,209 - -1.6 1,206,209 - -0.2 1,206,291 + -2.9 1,206,292 - +0.5 1,206,292 - -1.7 1,206,490 - nadA OKFHMN_06760 0.20 -1.3 1,206,629 + nadA OKFHMN_06760 0.33 -1.8 1,206,744 + nadA OKFHMN_06760 0.44 -2.6 1,206,744 + nadA OKFHMN_06760 0.44 +0.3 1,206,745 - nadA OKFHMN_06760 0.44 -1.9 1,206,865 - nadA OKFHMN_06760 0.56 -2.6 1,207,056 - nadA OKFHMN_06760 0.74 -1.0 1,207,178 + nadA OKFHMN_06760 0.86 -3.7
Or see this region's nucleotide sequence