Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhQ and ybhP are separated by 132 nucleotides ybhP and clsB overlap by 4 nucleotides clsB and ybhN overlap by 1 nucleotides ybhN and ybhM are separated by 35 nucleotides
OKFHMN_06320: ybhQ - Inner membrane protein YbhQ, at 1,125,867 to 1,126,277
ybhQ
OKFHMN_06325: ybhP - Uncharacterized protein YbhP, at 1,126,410 to 1,127,171
ybhP
OKFHMN_06330: clsB - cardiolipin synthase ClsB, at 1,127,168 to 1,128,409
clsB
OKFHMN_06335: ybhN - Inner membrane protein YbhN, at 1,128,409 to 1,129,365
ybhN
OKFHMN_06340: ybhM - Uncharacterized protein YbhM, at 1,129,401 to 1,130,114
ybhM
Position (kb) 1127
1128
1129 Strain fitness (log2 ratio) -1
0
1
2 at 1126.176 kb on - strand, within ybhQ at 1126.240 kb on - strand at 1126.304 kb on + strand at 1126.305 kb on - strand at 1126.305 kb on - strand at 1126.308 kb on + strand at 1126.369 kb on + strand at 1126.375 kb on - strand at 1126.388 kb on - strand at 1126.637 kb on + strand, within ybhP at 1126.637 kb on + strand, within ybhP at 1126.637 kb on + strand, within ybhP at 1126.638 kb on - strand, within ybhP at 1126.673 kb on - strand, within ybhP at 1126.831 kb on + strand, within ybhP at 1126.831 kb on + strand, within ybhP at 1126.831 kb on + strand, within ybhP at 1126.832 kb on - strand, within ybhP at 1126.832 kb on - strand, within ybhP at 1126.959 kb on - strand, within ybhP at 1127.226 kb on - strand at 1127.228 kb on + strand at 1127.447 kb on + strand, within clsB at 1127.476 kb on + strand, within clsB at 1127.542 kb on + strand, within clsB at 1127.572 kb on + strand, within clsB at 1127.572 kb on + strand, within clsB at 1127.789 kb on - strand, within clsB at 1127.789 kb on - strand, within clsB at 1127.802 kb on - strand, within clsB at 1127.853 kb on - strand, within clsB at 1127.891 kb on - strand, within clsB at 1127.980 kb on + strand, within clsB at 1127.981 kb on - strand, within clsB at 1127.981 kb on - strand, within clsB at 1127.981 kb on - strand, within clsB at 1127.981 kb on - strand, within clsB at 1127.984 kb on + strand, within clsB at 1127.985 kb on - strand, within clsB at 1128.076 kb on - strand, within clsB at 1128.544 kb on + strand, within ybhN at 1128.802 kb on - strand, within ybhN at 1128.822 kb on + strand, within ybhN at 1128.840 kb on + strand, within ybhN at 1128.847 kb on - strand, within ybhN at 1128.903 kb on + strand, within ybhN at 1129.116 kb on - strand, within ybhN at 1129.221 kb on + strand, within ybhN at 1129.221 kb on + strand, within ybhN at 1129.222 kb on - strand, within ybhN at 1129.222 kb on - strand, within ybhN at 1129.371 kb on - strand at 1129.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,126,176 - ybhQ OKFHMN_06320 0.75 +0.1 1,126,240 - +2.5 1,126,304 + -0.1 1,126,305 - -0.3 1,126,305 - -0.3 1,126,308 + +0.1 1,126,369 + -0.2 1,126,375 - -0.7 1,126,388 - +1.2 1,126,637 + ybhP OKFHMN_06325 0.30 +0.5 1,126,637 + ybhP OKFHMN_06325 0.30 +1.0 1,126,637 + ybhP OKFHMN_06325 0.30 -0.4 1,126,638 - ybhP OKFHMN_06325 0.30 +0.3 1,126,673 - ybhP OKFHMN_06325 0.35 -0.1 1,126,831 + ybhP OKFHMN_06325 0.55 -0.1 1,126,831 + ybhP OKFHMN_06325 0.55 +0.7 1,126,831 + ybhP OKFHMN_06325 0.55 -1.4 1,126,832 - ybhP OKFHMN_06325 0.55 +0.1 1,126,832 - ybhP OKFHMN_06325 0.55 -0.0 1,126,959 - ybhP OKFHMN_06325 0.72 -0.5 1,127,226 - +1.2 1,127,228 + +0.1 1,127,447 + clsB OKFHMN_06330 0.22 -0.6 1,127,476 + clsB OKFHMN_06330 0.25 -0.8 1,127,542 + clsB OKFHMN_06330 0.30 -1.3 1,127,572 + clsB OKFHMN_06330 0.33 +0.2 1,127,572 + clsB OKFHMN_06330 0.33 +0.5 1,127,789 - clsB OKFHMN_06330 0.50 +0.8 1,127,789 - clsB OKFHMN_06330 0.50 -0.6 1,127,802 - clsB OKFHMN_06330 0.51 +0.4 1,127,853 - clsB OKFHMN_06330 0.55 +0.9 1,127,891 - clsB OKFHMN_06330 0.58 +0.6 1,127,980 + clsB OKFHMN_06330 0.65 +0.1 1,127,981 - clsB OKFHMN_06330 0.65 -0.2 1,127,981 - clsB OKFHMN_06330 0.65 +0.3 1,127,981 - clsB OKFHMN_06330 0.65 -0.0 1,127,981 - clsB OKFHMN_06330 0.65 -0.1 1,127,984 + clsB OKFHMN_06330 0.66 +0.5 1,127,985 - clsB OKFHMN_06330 0.66 +0.1 1,128,076 - clsB OKFHMN_06330 0.73 -0.0 1,128,544 + ybhN OKFHMN_06335 0.14 +0.3 1,128,802 - ybhN OKFHMN_06335 0.41 +0.2 1,128,822 + ybhN OKFHMN_06335 0.43 -1.4 1,128,840 + ybhN OKFHMN_06335 0.45 -0.3 1,128,847 - ybhN OKFHMN_06335 0.46 +0.3 1,128,903 + ybhN OKFHMN_06335 0.52 -1.1 1,129,116 - ybhN OKFHMN_06335 0.74 +0.1 1,129,221 + ybhN OKFHMN_06335 0.85 +1.0 1,129,221 + ybhN OKFHMN_06335 0.85 +2.1 1,129,222 - ybhN OKFHMN_06335 0.85 -1.6 1,129,222 - ybhN OKFHMN_06335 0.85 -1.1 1,129,371 - +0.8 1,129,375 - -0.6
Or see this region's nucleotide sequence