Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjP and artP are separated by 217 nucleotides artP and artI are separated by 17 nucleotides artI and artQ are separated by 6 nucleotides artQ and artM overlap by 1 nucleotides
OKFHMN_05880: ybjP - lipoprotein, at 1,040,210 to 1,040,725
ybjP
OKFHMN_05885: artP - arginine ABC transporter ATP-binding protein ArtP, at 1,040,943 to 1,041,671
artP
OKFHMN_05890: artI - Putative ABC transporter arginine-binding protein 2, at 1,041,689 to 1,042,420
artI
OKFHMN_05895: artQ - arginine ABC transporter permease ArtQ, at 1,042,427 to 1,043,143
artQ
OKFHMN_05900: artM - arginine ABC transporter permease ArtM, at 1,043,143 to 1,043,811
artM
Position (kb)
1041
1042
1043 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1040.823 kb on - strand at 1040.823 kb on - strand at 1040.835 kb on + strand at 1040.895 kb on - strand at 1040.897 kb on + strand at 1040.897 kb on + strand at 1040.912 kb on + strand at 1040.912 kb on + strand at 1040.912 kb on + strand at 1040.913 kb on - strand at 1040.916 kb on + strand at 1040.931 kb on - strand at 1040.948 kb on + strand at 1040.966 kb on + strand at 1040.966 kb on + strand at 1041.213 kb on + strand, within artP at 1041.214 kb on - strand, within artP at 1041.344 kb on + strand, within artP at 1041.355 kb on - strand, within artP at 1041.428 kb on - strand, within artP at 1041.518 kb on + strand, within artP at 1041.596 kb on + strand, within artP at 1041.651 kb on - strand at 1041.999 kb on - strand, within artI at 1042.001 kb on + strand, within artI at 1042.040 kb on + strand, within artI at 1042.041 kb on - strand, within artI at 1042.090 kb on + strand, within artI at 1042.117 kb on + strand, within artI at 1042.200 kb on + strand, within artI at 1042.200 kb on + strand, within artI at 1042.398 kb on - strand at 1042.622 kb on - strand, within artQ at 1042.673 kb on - strand, within artQ at 1042.778 kb on + strand, within artQ at 1042.867 kb on + strand, within artQ at 1043.011 kb on + strand, within artQ at 1043.033 kb on - strand, within artQ at 1043.060 kb on + strand, within artQ at 1043.293 kb on + strand, within artM at 1043.418 kb on - strand, within artM
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,040,823 - +0.3 1,040,823 - -0.2 1,040,835 + +0.5 1,040,895 - +0.1 1,040,897 + +1.0 1,040,897 + +2.3 1,040,912 + -0.2 1,040,912 + +0.2 1,040,912 + -2.5 1,040,913 - -2.8 1,040,916 + -0.4 1,040,931 - +0.7 1,040,948 + -0.2 1,040,966 + +0.4 1,040,966 + +0.1 1,041,213 + artP OKFHMN_05885 0.37 +0.9 1,041,214 - artP OKFHMN_05885 0.37 +0.1 1,041,344 + artP OKFHMN_05885 0.55 +0.7 1,041,355 - artP OKFHMN_05885 0.57 +0.5 1,041,428 - artP OKFHMN_05885 0.67 -0.4 1,041,518 + artP OKFHMN_05885 0.79 -2.0 1,041,596 + artP OKFHMN_05885 0.90 +1.4 1,041,651 - -0.7 1,041,999 - artI OKFHMN_05890 0.42 +0.1 1,042,001 + artI OKFHMN_05890 0.43 +0.9 1,042,040 + artI OKFHMN_05890 0.48 -1.3 1,042,041 - artI OKFHMN_05890 0.48 +1.0 1,042,090 + artI OKFHMN_05890 0.55 -0.8 1,042,117 + artI OKFHMN_05890 0.58 +0.7 1,042,200 + artI OKFHMN_05890 0.70 +2.3 1,042,200 + artI OKFHMN_05890 0.70 -0.7 1,042,398 - -0.4 1,042,622 - artQ OKFHMN_05895 0.27 +2.9 1,042,673 - artQ OKFHMN_05895 0.34 -1.7 1,042,778 + artQ OKFHMN_05895 0.49 +0.2 1,042,867 + artQ OKFHMN_05895 0.61 +0.3 1,043,011 + artQ OKFHMN_05895 0.81 -0.9 1,043,033 - artQ OKFHMN_05895 0.85 -0.8 1,043,060 + artQ OKFHMN_05895 0.88 -0.7 1,043,293 + artM OKFHMN_05900 0.22 -1.7 1,043,418 - artM OKFHMN_05900 0.41 -0.1
Or see this region's nucleotide sequence